RNA id: TU73241


Basic Information

Item Value
RNA id TU73241
length 585
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G66108
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59881452 ~ 59882036 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttctccccaatttcatggtatccaattgttgtagtagctactatcttgtctcatcgctacaactcccgtacaggctcgggagagacgaaggctgaatgtcatgcgtcctccgatacacaacccaaccagccgtactgcttcttaacacagcgcgcatccaacccggaatccagccgcaccaatgtgtcggaggctacaccgtgcacctggtaaccttggctagcgcgcactgcgcccagcccgccacaggagtcgccggtgcgcgatgagacaaggagatccctaccgaccaatccctccctaacccggacgacgctaggccaattgtgcgtcgccccacggacctcccagtcgcggccggttacgacagagcctgggcgcgaacccagggactctgatggcacagctggcgctgcagtacagcgcccttaaccactgcgccacccgggaggctcgatgaagctctcttgttcagatatcggtaagtggattGGAGGCAGGGCATccaatccagttgtttgtgtcattggTTTAgggaaagtacctgcataattgcacacccaactcaattaggtgcttcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73233 lncRNA downstream 6395 59874569 ~ 59875057 (-) True G66100
TU73213 lncRNA downstream 20024 59861210 ~ 59861428 (-) True G66080
TU73084 lncRNA downstream 145298 59729847 ~ 59736154 (-) True G65982
TU73037 lncRNA downstream 195706 59663612 ~ 59685746 (-) True G65937
TU72971 lncRNA downstream 238417 59549868 ~ 59643035 (-) False LOC110532486
TU73253 lncRNA upstream 8372 59890408 ~ 59891088 (-) True G66120
TU73279 lncRNA upstream 25688 59907724 ~ 59908009 (-) True G66146
TU73280 lncRNA upstream 26109 59908145 ~ 59908357 (-) True G66147
TU73287 lncRNA upstream 29171 59911207 ~ 59912066 (-) True G66154
TU73288 lncRNA upstream 30308 59912344 ~ 59913305 (-) True G66155
LOC110532486 mRNA downstream 237167 59641779 ~ 59644285 (-) False LOC110532486
XM_021606304.2 mRNA downstream 364720 59511553 ~ 59516732 (-) False tmem72
XM_021606321.2 mRNA downstream 364720 59511553 ~ 59516732 (-) True tmem72
XM_021606312.2 mRNA downstream 364802 59511553 ~ 59516650 (-) False tmem72
XM_021606291.2 mRNA downstream 374384 59438585 ~ 59507068 (-) True rassf4a
XR_005052269.1 mRNA upstream 134960 60016996 ~ 60024584 (-) False LOC118964951
XM_036981267.1 mRNA upstream 145182 60027218 ~ 60064905 (-) False LOC110525944
XM_036981284.1 mRNA upstream 145182 60027218 ~ 60064906 (-) False LOC110525944
XM_036981276.1 mRNA upstream 147071 60029107 ~ 60064905 (-) True LOC110525944
XM_021606503.2 mRNA upstream 207954 60089990 ~ 60124142 (-) False LOC110525964
TU72370 other downstream 726307 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 1095835 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 2482964 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2818604 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 548171 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 1800242 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 2099695 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 2529486 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3395172 63277208 ~ 63277752 (-) True G70013

Expression Profile