RNA id: TU73287


Basic Information

Item Value
RNA id TU73287
length 860
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G66154
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59911207 ~ 59912066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaaaggaattctccggttggaacattattgaagatttatgttaaaaacatcctaaagattgattctatactttgtttgacatgtttctacggactgtaacggaactttttgacttttcgtctgttcctagtgaacgcgcttcgtgagtttggatttgtttaccaaacgcgccaacaaaaggagccatttggacataaatgatggacattatcgaacaaaacaaacatttattgtggaactgggattcctgggagtgcattctcatgaagatcttcaaaggtaagtgaatacttataatgctatttctgacttctgttgactacacaacatggcggatatctgtttgggttgttttggtctctgagagccgtactcagattattgcaaggTGTGCTTTTTTcgtaaaacatttttgaaatctgacacagcggttgcattaaggagaagtggatgtaaaattccatgcataacagttgtatcttttagcaatgtttattatgagttttctgtaaattgatgtggctctctgcaaaatcaccggatgttttggaactactgaacataatgtaaactcagattttttgatataaatatgaactttaccgaacaaatcatacatgtattgtgtaacatgaagtcctatgagtgtcatctgatgaagatcatcaaaggttggtggttaatttatctctatttctgcttttttgtgactcctctctttggctggaaaaatggctgtgtttttctgtgacttggctctgacctaacataatcgtttggtttgctttcgtcgtaaagccttttttaaatctgacactgtgactggatttacaacaagtgtatctttaaaatgttgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73280 lncRNA downstream 2850 59908145 ~ 59908357 (-) True G66147
TU73279 lncRNA downstream 3198 59907724 ~ 59908009 (-) True G66146
TU73253 lncRNA downstream 20119 59890408 ~ 59891088 (-) True G66120
TU73241 lncRNA downstream 29171 59881452 ~ 59882036 (-) True G66108
TU73233 lncRNA downstream 36150 59874569 ~ 59875057 (-) True G66100
TU73288 lncRNA upstream 278 59912344 ~ 59913305 (-) True G66155
TU73939 lncRNA upstream 29431 59941497 ~ 59942056 (-) True G66764
TU73942 lncRNA upstream 33853 59945919 ~ 59946179 (-) True G66767
TU73944 lncRNA upstream 34983 59947049 ~ 59947340 (-) True G66769
TU73948 lncRNA upstream 38583 59950649 ~ 59950873 (-) True G66773
LOC110532486 mRNA downstream 266922 59641779 ~ 59644285 (-) False LOC110532486
XM_021606304.2 mRNA downstream 394475 59511553 ~ 59516732 (-) False tmem72
XM_021606321.2 mRNA downstream 394475 59511553 ~ 59516732 (-) True tmem72
XM_021606312.2 mRNA downstream 394557 59511553 ~ 59516650 (-) False tmem72
XM_021606291.2 mRNA downstream 404139 59438585 ~ 59507068 (-) True rassf4a
XR_005052269.1 mRNA upstream 104930 60016996 ~ 60024584 (-) False LOC118964951
XM_036981267.1 mRNA upstream 115152 60027218 ~ 60064905 (-) False LOC110525944
XM_036981284.1 mRNA upstream 115152 60027218 ~ 60064906 (-) False LOC110525944
XM_036981276.1 mRNA upstream 117041 60029107 ~ 60064905 (-) True LOC110525944
XM_021606503.2 mRNA upstream 177924 60089990 ~ 60124142 (-) False LOC110525964
TU72370 other downstream 756062 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 1125590 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 2512719 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2848359 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 518141 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 1770212 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 2069665 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 2499456 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3365142 63277208 ~ 63277752 (-) True G70013

Expression Profile