RNA id: TU73942



Basic Information


Item Value
RNA id TU73942
length 261
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G66767
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59945919 ~ 59946179 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cgtctgaggaggagtaaggatcggaccaaagcgcagcgtggtaagtgttcatgatgattttaattaaagaaagcactgaacactgaatcaaaacaataaacgatgacgTGAAATTACAAacccgaaacagtaccgtgtggcccaaacactcacacagaaaaaaacacccacaaaccaaaagtgaaacccaggctacctaagtatgattctcaatcagagacaactaacgacacctgcctctgattgagaaccatactaggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73939 lncRNA downstream 3863 59941497 ~ 59942056 (-) True G66764
TU73288 lncRNA downstream 32614 59912344 ~ 59913305 (-) True G66155
TU73287 lncRNA downstream 33853 59911207 ~ 59912066 (-) True G66154
TU73280 lncRNA downstream 37562 59908145 ~ 59908357 (-) True G66147
TU73279 lncRNA downstream 37910 59907724 ~ 59908009 (-) True G66146
TU73944 lncRNA upstream 870 59947049 ~ 59947340 (-) True G66769
TU73948 lncRNA upstream 4470 59950649 ~ 59950873 (-) True G66773
TU73957 lncRNA upstream 15878 59962057 ~ 59962302 (-) True G66782
TU73958 lncRNA upstream 16173 59962352 ~ 59962573 (-) True G66783
TU73959 lncRNA upstream 17931 59964110 ~ 59964388 (-) True G66784
LOC110532486 mRNA downstream 301634 59641779 ~ 59644285 (-) False LOC110532486
XM_021606304.2 mRNA downstream 429187 59511553 ~ 59516732 (-) False tmem72
XM_021606321.2 mRNA downstream 429187 59511553 ~ 59516732 (-) True tmem72
XM_021606312.2 mRNA downstream 429269 59511553 ~ 59516650 (-) False tmem72
XM_021606291.2 mRNA downstream 438851 59438585 ~ 59507068 (-) True rassf4a
XR_005052269.1 mRNA upstream 70817 60016996 ~ 60024584 (-) False LOC118964951
XM_036981267.1 mRNA upstream 81039 60027218 ~ 60064905 (-) False LOC110525944
XM_036981284.1 mRNA upstream 81039 60027218 ~ 60064906 (-) False LOC110525944
XM_036981276.1 mRNA upstream 82928 60029107 ~ 60064905 (-) True LOC110525944
XM_021606503.2 mRNA upstream 143811 60089990 ~ 60124142 (-) False LOC110525964
TU72370 other downstream 790774 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 1160302 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 2547431 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2883071 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 484028 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 1736099 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 2035552 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 2465343 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3331029 63277208 ~ 63277752 (-) True G70013

Expression Profile