RNA id: TCONS_00026645


Basic Information

Item Value
RNA id TCONS_00026645
length 2234
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_013526
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 34158178 ~ 34171280 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTTTGCTTTATGTTTCccttgtgtggaacccagcatttgttaGCCTATTTTCTCACAACCACACagtagttaatttatttaatttttaattttttaatttttttgtaatcgACTAACTATAACAACTCGCAATTTCAGTTGACCACGGCATATTTACAGCTCCTCAATAAACTAATAATTGTTTAGTTAATATATAAGTTAACTGTGAAATGTATGTGTGAACAAAGCACACTTCTCTCTTTACATCAAGCTAGGCTAGGAGGCTACATGAAACCAGGTGGAACTAAAAACAGACACCGTAAGACACGTCAGCTGAACTATACGGACACATTTCACCGACGCACCACCCCGGCTTCCTTCTCATTCTAGCAGTCAGGTGTATTTACTGCGCTTCCTTGCGCCTTGTAAACATTAGGTATATTACATATCTGTGTGGATattttttgtctcagcaaagtgcTGCTCATTTGCCGTCAGTGAGTTTTTTCGTCATTCATGTAAAGCTTTTACTCATTGATTCACTGATGTCTTGATTTGTCATGTGGTTTGTCATCATAGTGCAAGGTGTTTTGAGGCCATATCTGGATTGATGCCCGGCAGATTAAGATGGAACTGTCTGAATCTCTCACACACAAGAACGGGAGGCAGCGGAAGCCTGTGCTGCTCAACATGGGGGAAAGAGAGTCCAAGCTAGAAGTTGGGGGAGATGAAGAGGCTCTTCTTCCAAACTCTGACAGAGCCGATGGACGAACGCAAACACACAAAGGGATTAAAGGAGAACTGGGCAATGTGTCCCTGTTATTGTTCCTGTATGTGCTTCAGGGCATTCCTTTAGGCTTGGCTGGCAGCATTCCTCTCATCATGCAGAGTAAGAATGTCAGCTATAAAGACCAGGCCTATTTCAGCTTCGTCTTTTGGCCCTTCAGTCTAAAGTTGTTCTGGGCTCCTCTGGTGGACTCTGTGTATCTCAAGCAGTTTGGCAGGAGGAAGTCCTGGCTGGTTCCTACTCAGTACCTGCTTGGTCTTTTTATGCTGTATCTGTCATTGACCGTTGACTCCATGCTTCAGACGGATGGACAGAAGGGGCCGGATGTGATTACTTTAACCGCAGTCTTCTTCTTGCTGGCTTTCCTCGCAGCCACGCAGGACATTGCCGTTGATGGCTGGGCTTTGACTATGCTGTCCAGGGAAAATGTGGGTTATGCTTCCACTTGTAACTCTGTGGGTCAGACGGCAGGATACTTCCTGGGAAATGTGCTGTTTCTGGCTCTGGAGTCGGCTGATTTCTGCAACAAGTATTTGAGGTTTGAGCCTCAGGAACGGGGAATTGTTACACTCTCAGATTTCTTGTTTTTCTGGGGGATTGTGTTTATGGTGTCCACCACTCTGGTCGCTGTCCTGAAGAAGGAAAATGGCAAACCCCATCCCGCTAAGAAGAAGCCCAAAGAGGAGACACAGGGTGTGAAGGAGACTTACAAACTTCTGTTTTCCATCATTAAAATGCCCACCGTCTTTACTTTCTGTGCCCTACTACTGACTGCTAAGGTGGGATTCTCCGCTGCAGATGCCGTGACGGGGCTGAAGTTAGTGGAAGCTGGAGTTCCAAAAGAGCAGCTAGCTCTGCTGGCAGTCCCAATGGTGCCTCTGCAGATCCTGCTGCCTCTGGTTATTAGTAAATACACAGCTGGCCCACGTCCACTCGACATTTTCTACAAGGCATTTCCGTTTAGGTTACTGATTGGTCTAGAATATGCCCTGCTGGTTTGGTGGACCCCAAGTGTTCGGCAGGAGGAGGGCTTTCCTGTCTATTACTATGCTGTTGTGCTTCTGAGCTATGCAGTACATCAGGTGGCACTATACAGCATGTATGTTGCCTGCATGGCCTTTCATGCCAAGGTCAGTGACCCTGTGATTGGGGGCACCTACATGACCCTTCTGAACACTGTGACTAATCTAGGAGGGAATTGGCCCTCAACACTGGCTCTATGGCTGGTGGACCCACTCACCTCAAAAGAGTGTGACGGGGCCCCTGGACAGACGTGCAGCTCCATTGAAGAAGCAGGACTCTGTGTCAGAGAAGGTGGTTCGTGTGTCACATCATTGGACGGTTACTATGTGGAGTCTGTGGTGTGCGTTCTGATTGGCCTCTGCTGGTGGATCTTCTTTGGGAAAAGAATGAAGCGCTTACAAGAAGAAAGTCCCTCTGCGTGGCATTGCAGGGTTGCTAAATAG

Function

GO:

id name namespace
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0021955 central nervous system neuron axonogenesis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008521 acetyl-CoA transmembrane transporter activity molecular_function
GO:0015295 solute molecular_function

KEGG:

id description
ko00604 Glycosphingolipid biosynthesis - ganglio series
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040426-1241 Predicted to enable solute:proton symporter activity. Acts upstream of or within central nervous system neuron axonogenesis and negative regulation of BMP signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 42. Orthologous to human SLC33A1 (solute carrier family 33 member 1).

Ensembl:

ensembl_id ENSDART00000122321

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026979 lncRNA downstream 1436 34151678 ~ 34156792 (-) True XLOC_013525
TCONS_00027368 lncRNA downstream 15598 34122196 ~ 34142630 (-) True XLOC_013524
TCONS_00026978 lncRNA downstream 208369 33946342 ~ 33949859 (-) True XLOC_013522
TCONS_00027367 lncRNA downstream 361616 33782464 ~ 33796612 (-) True XLOC_013521
TCONS_00027366 lncRNA downstream 422978 33714357 ~ 33735250 (-) True XLOC_013520
TCONS_00027369 lncRNA upstream 56072 34227352 ~ 34227899 (-) True XLOC_013527
TCONS_00027370 lncRNA upstream 380248 34551528 ~ 34553656 (-) False XLOC_013529
TCONS_00027371 lncRNA upstream 380248 34551528 ~ 34554531 (-) False XLOC_013529
TCONS_00026980 lncRNA upstream 380261 34551541 ~ 34554617 (-) True XLOC_013529
TCONS_00026981 lncRNA upstream 714960 34886240 ~ 34888072 (-) True XLOC_013530
TCONS_00026643 mRNA downstream 1463 34146007 ~ 34156765 (-) False XLOC_013525
TCONS_00026641 mRNA downstream 15039 33981474 ~ 34143189 (-) False XLOC_013524
TCONS_00026642 mRNA downstream 96751 33988414 ~ 34061477 (-) False XLOC_013524
TCONS_00026640 mRNA downstream 178793 33972831 ~ 33979435 (-) True XLOC_013523
TCONS_00026639 mRNA downstream 178806 33972831 ~ 33979422 (-) False XLOC_013523
TCONS_00026646 mRNA upstream 371245 34542525 ~ 34549721 (-) False XLOC_013528
TCONS_00026647 mRNA upstream 371246 34542526 ~ 34549758 (-) True XLOC_013528
TCONS_00026648 mRNA upstream 1203949 35375229 ~ 35390735 (-) True XLOC_013532
TCONS_00026649 mRNA upstream 1231479 35402759 ~ 35407289 (-) False XLOC_013533
TCONS_00026650 mRNA upstream 1231765 35403045 ~ 35407695 (-) False XLOC_013533
TCONS_00026632 other downstream 1064487 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026625 other downstream 1631124 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026611 other downstream 3302693 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026599 other downstream 4239123 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026598 other downstream 4259867 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026656 other upstream 1401901 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 2284027 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026673 other upstream 3238543 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026691 other upstream 5014894 39186174 ~ 39188401 (-) True XLOC_013560
TCONS_00026695 other upstream 5415266 39586546 ~ 39586665 (-) True XLOC_013565

Expression Profile

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