RNA id: TU73992



Basic Information


Item Value
RNA id TU73992
length 294
lncRNA type intronic
GC content 0.43
exon number 1
gene id G66817
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60015137 ~ 60015430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCACATGCATATATTTCCATGCCCACAAAGGTTCTAGCATGAGGCAGGGCCATGACTACACCATTGAGAGGAACCAGTTAAGTTCCTGACTAGCAACAAAGTATTTATTGGCTGTCGAGATGTGCAAGGAGTTGATTATTCCTAGTAGCAGGGTATAAATATATGTGCTTGTGTAAACAAGCACATATAGCTGTTTGACGCAGTGGATGAATAGACTTGGTTTCAGCTTTTCCTAGTTGTCCGtttgagtttttactcagttTGTTCAGAACCTAACACCAGACAATGAAAATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73991 lncRNA downstream 1728 60013106 ~ 60013409 (-) True G66816
TU73963 lncRNA downstream 46343 59968588 ~ 59968794 (-) True G66788
TU73962 lncRNA downstream 46735 59967942 ~ 59968402 (-) True G66787
TU73960 lncRNA downstream 50063 59964807 ~ 59965074 (-) True G66785
TU73959 lncRNA downstream 50749 59964110 ~ 59964388 (-) True G66784
TU73956 lncRNA upstream 1114 60016544 ~ 60017157 (-) False LOC118964951
TU73955 lncRNA upstream 1911 60017341 ~ 60021223 (-) True LOC118964951
TU73994 lncRNA upstream 10807 60026237 ~ 60026460 (-) True G66819
TU74060 lncRNA upstream 82374 60097804 ~ 60098997 (-) True G66850
TU74069 lncRNA upstream 112030 60127460 ~ 60127691 (-) True G66858
LOC110532486 mRNA downstream 370852 59641779 ~ 59644285 (-) False LOC110532486
XM_021606304.2 mRNA downstream 498405 59511553 ~ 59516732 (-) False tmem72
XM_021606321.2 mRNA downstream 498405 59511553 ~ 59516732 (-) True tmem72
XM_021606312.2 mRNA downstream 498487 59511553 ~ 59516650 (-) False tmem72
XM_021606291.2 mRNA downstream 508069 59438585 ~ 59507068 (-) True rassf4a
XR_005052269.1 mRNA upstream 1566 60016996 ~ 60024584 (-) False LOC118964951
XM_036981267.1 mRNA upstream 11788 60027218 ~ 60064905 (-) False LOC110525944
XM_036981284.1 mRNA upstream 11788 60027218 ~ 60064906 (-) False LOC110525944
XM_036981276.1 mRNA upstream 13677 60029107 ~ 60064905 (-) True LOC110525944
XM_021606503.2 mRNA upstream 74560 60089990 ~ 60124142 (-) False LOC110525964
TU72370 other downstream 859992 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 1229520 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 2616649 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2952289 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 414777 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 1666848 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 1966301 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 2396092 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3261778 63277208 ~ 63277752 (-) True G70013

Expression Profile