RNA id: TU73351



Basic Information


Item Value
RNA id TU73351
length 225
lncRNA type intronic
GC content 0.35
exon number 1
gene id G66214
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60020477 ~ 60020701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGCAAtttgcaattccacatgtgaaagtgaATCTAATTTGCATTCTCATGTCAGAAAACTCCacatttactccaatgtttgtaaacaaagtaaatgtaaacaaaccatACATAACCTAAAAACATGCTTTAAACTATAATATTGAAATCATAGATGGTCATTTCTTGCAGCCATAGCGTAGTCTATGGATTTGAGAGcagttgcatttctccagccccaggccTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73320 lncRNA upstream 81665 59938558 ~ 59938812 (+) True G66187
TU73299 lncRNA upstream 93958 59926193 ~ 59926519 (+) True lrrc18a
TU73278 lncRNA upstream 112488 59907712 ~ 59907989 (+) True G66145
TU73275 lncRNA upstream 112776 59907120 ~ 59907701 (+) True G66142
TU73254 lncRNA upstream 128611 59891511 ~ 59891866 (+) True G66121
TU73365 lncRNA downstream 6536 60027237 ~ 60091030 (+) True G66225
TU73409 lncRNA downstream 109618 60130319 ~ 60133974 (+) False G66269
TU73410 lncRNA downstream 109618 60130319 ~ 60141209 (+) True G66269
TU73453 lncRNA downstream 155277 60175978 ~ 60176307 (+) True G66308
TU73455 lncRNA downstream 159195 60179896 ~ 60180249 (+) True G66310
XM_036981233.1 mRNA upstream 1782 59999410 ~ 60018695 (+) False LOC110525930
XM_036981240.1 mRNA upstream 1782 59999778 ~ 60018695 (+) False LOC110525930
XM_036981226.1 mRNA upstream 1782 60000702 ~ 60018695 (+) False LOC110525930
XM_036981245.1 mRNA upstream 1782 60000704 ~ 60018695 (+) True LOC110525930
XM_021606417.2 mRNA upstream 26826 59969515 ~ 59993651 (+) False si:ch211-223a10.1
XM_021606624.2 mRNA downstream 162514 60183215 ~ 60218672 (+) True LOC110526033
XR_005053649.1 mRNA downstream 196420 60217121 ~ 60217262 (+) True LOC118966766
XM_036981447.1 mRNA downstream 208770 60229471 ~ 60264209 (+) False LOC110526041
XM_021606634.2 mRNA downstream 208771 60229472 ~ 60264209 (+) False LOC110526041
XM_036981456.1 mRNA downstream 210542 60231243 ~ 60264209 (+) True LOC110526041
TU73321 other upstream 78413 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 695348 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 1320098 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 1354571 58665334 ~ 58665906 (+) True G64315
TU71238 other upstream 1432892 58586858 ~ 58587585 (+) True G64292
TU75047 other downstream 1294173 61314874 ~ 61315252 (+) True G67806
TU75188 other downstream 1709064 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 3254262 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 4788888 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 5895034 65915735 ~ 65922285 (+) False LOC110527164

Expression Profile