RNA id: TCONS_00027369


Basic Information

Item Value
RNA id TCONS_00027369
length 548
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id XLOC_013527
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 34227352 ~ 34227899 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAGGTCCATTCCCACAGCGGTAGTTGGGCACAGCCTCGTCCTGGCCTGTCAGGAAGGTGAGTGTTCCCTCCACAGCTTTGGAAATGGTAAAGCAGGAGTCATAGATGACATAACCCAGCTCAGTTTTGGGTAACAGATCTGTTCTGCTGTTAATCTCTTTCAGAGCAAACAACATGGTCTGAGCCCAGCGGAATGCGCGGAAGTTAAAGCTGAGGGGGAATTCACATGTTACAATTTAACACTGTActtgttcttgttgttgtttactAGACATTATTCTATAACTATGATGTATTCCTGTGTTTATTACAGTTTGTTTAAGTTAATCTTTTGTCCTCTACAAATTACTTTCtagaacttttgttttgtttttatacccCTTTTTATTGCTTGTTTCATTTAGAATCCCAGATCACAAACAATATTCATGAGAGAGTTAAACTCTACTATTTCATGAACACTTCACAACATACCtaagaattataaataaataaatggttgaataaataaataaacaaatgattgaataaacaaataaacatataa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026979 lncRNA downstream 70560 34151678 ~ 34156792 (-) True XLOC_013525
TCONS_00027368 lncRNA downstream 84722 34122196 ~ 34142630 (-) True XLOC_013524
TCONS_00026978 lncRNA downstream 277493 33946342 ~ 33949859 (-) True XLOC_013522
TCONS_00027367 lncRNA downstream 430740 33782464 ~ 33796612 (-) True XLOC_013521
TCONS_00027366 lncRNA downstream 492102 33714357 ~ 33735250 (-) True XLOC_013520
TCONS_00027370 lncRNA upstream 323629 34551528 ~ 34553656 (-) False XLOC_013529
TCONS_00027371 lncRNA upstream 323629 34551528 ~ 34554531 (-) False XLOC_013529
TCONS_00026980 lncRNA upstream 323642 34551541 ~ 34554617 (-) True XLOC_013529
TCONS_00026981 lncRNA upstream 658341 34886240 ~ 34888072 (-) True XLOC_013530
TCONS_00027372 lncRNA upstream 1023399 35251298 ~ 35254022 (-) True XLOC_013531
TCONS_00026645 mRNA downstream 56072 34158228 ~ 34171280 (-) True XLOC_013526
TCONS_00026644 mRNA downstream 56434 34158178 ~ 34170918 (-) False XLOC_013526
TCONS_00026643 mRNA downstream 70587 34146007 ~ 34156765 (-) False XLOC_013525
TCONS_00026641 mRNA downstream 84163 33981474 ~ 34143189 (-) False XLOC_013524
TCONS_00026642 mRNA downstream 165875 33988414 ~ 34061477 (-) False XLOC_013524
TCONS_00026646 mRNA upstream 314626 34542525 ~ 34549721 (-) False XLOC_013528
TCONS_00026647 mRNA upstream 314627 34542526 ~ 34549758 (-) True XLOC_013528
TCONS_00026648 mRNA upstream 1147330 35375229 ~ 35390735 (-) True XLOC_013532
TCONS_00026649 mRNA upstream 1174860 35402759 ~ 35407289 (-) False XLOC_013533
TCONS_00026650 mRNA upstream 1175146 35403045 ~ 35407695 (-) False XLOC_013533
TCONS_00026632 other downstream 1133611 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026625 other downstream 1700248 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026611 other downstream 3371817 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026599 other downstream 4308247 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026598 other downstream 4328991 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026656 other upstream 1345282 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 2227408 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026673 other upstream 3181924 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026691 other upstream 4958275 39186174 ~ 39188401 (-) True XLOC_013560
TCONS_00026695 other upstream 5358647 39586546 ~ 39586665 (-) True XLOC_013565