RNA id: TU73994



Basic Information


Item Value
RNA id TU73994
length 224
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G66819
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60026237 ~ 60026460 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cagatgcggtggattgagacacagcccatgcaaaaaaaacatatctctagcttaaactgacagatttggatggggattttttttattatgttgCTGGGGATGGGACATTCACAAGAAAGAGAGTCCATTCTGTCACTCAAGGCTTCTCTGTCAAATGGAACATCCTGCTCTCTGCTACCATGGATATTTGAAAGAGCCATTGGATTTACTAATTTTTACATGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73955 lncRNA downstream 5014 60017341 ~ 60021223 (-) True LOC118964951
TU73956 lncRNA downstream 9080 60016544 ~ 60017157 (-) False LOC118964951
TU73992 lncRNA downstream 10807 60015137 ~ 60015430 (-) True G66817
TU73991 lncRNA downstream 12828 60013106 ~ 60013409 (-) True G66816
TU73963 lncRNA downstream 57443 59968588 ~ 59968794 (-) True G66788
TU74060 lncRNA upstream 71344 60097804 ~ 60098997 (-) True G66850
TU74069 lncRNA upstream 101000 60127460 ~ 60127691 (-) True G66858
TU74085 lncRNA upstream 147202 60173662 ~ 60173861 (-) True G66874
TU74087 lncRNA upstream 149500 60175960 ~ 60176302 (-) True G66876
TU74089 lncRNA upstream 151217 60177677 ~ 60177945 (-) True G66878
XR_005052269.1 mRNA downstream 1653 60016996 ~ 60024584 (-) False LOC118964951
LOC110532486 mRNA downstream 381952 59641779 ~ 59644285 (-) False LOC110532486
XM_021606304.2 mRNA downstream 509505 59511553 ~ 59516732 (-) False tmem72
XM_021606321.2 mRNA downstream 509505 59511553 ~ 59516732 (-) True tmem72
XM_021606312.2 mRNA downstream 509587 59511553 ~ 59516650 (-) False tmem72
XM_036981267.1 mRNA upstream 758 60027218 ~ 60064905 (-) False LOC110525944
XM_036981284.1 mRNA upstream 758 60027218 ~ 60064906 (-) False LOC110525944
XM_036981276.1 mRNA upstream 2647 60029107 ~ 60064905 (-) True LOC110525944
XM_021606503.2 mRNA upstream 63530 60089990 ~ 60124142 (-) False LOC110525964
XM_021606512.2 mRNA upstream 63530 60089990 ~ 60124142 (-) False LOC110525964
TU72370 other downstream 871092 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 1240620 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 2627749 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2963389 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 403747 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 1655818 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 1955271 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 2385062 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3250748 63277208 ~ 63277752 (-) True G70013

Expression Profile