RNA id: TU74317



Basic Information


Item Value
RNA id TU74317
length 209
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G67095
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60498493 ~ 60498701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACACGTATGATTTGCTTCTCTTGTCGCGGGATTTGAGCGCTATGAAGGCGACTGTGTCATAGAAAGTATTCTGAAGGATGCACGGGCCGAACTGTGCCCCAGCTGGGATGTTGCGAGTGACGTGCACGCTGGTATGGAGGTCTGTCGCGTGGTGCTGGAGGAATTTACCCTCAATGGTCCAGAGGGAACGAGATAAAAAACTCTGGTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU74316 lncRNA downstream 1185 60497079 ~ 60497308 (-) True G67094
TU74278 lncRNA downstream 76945 60417294 ~ 60421548 (-) True G67056
TU74231 lncRNA downstream 127112 60369797 ~ 60371381 (-) True G67011
TU74188 lncRNA downstream 182253 60316038 ~ 60316240 (-) True G66969
TU74185 lncRNA downstream 185437 60312810 ~ 60313056 (-) True G66966
TU74318 lncRNA upstream 410 60499111 ~ 60499334 (-) True G67096
TU74321 lncRNA upstream 7138 60505839 ~ 60506099 (-) True G67099
TU74243 lncRNA upstream 23112 60521813 ~ 60522228 (-) True G67023
TU74676 lncRNA upstream 509766 61008467 ~ 61008711 (-) True G67446
TU74690 lncRNA upstream 521474 61020175 ~ 61020408 (-) True G67459
XM_021606720.2 mRNA downstream 3193 60430184 ~ 60495300 (-) False LOC110526097
XR_002473876.2 mRNA downstream 149184 60342589 ~ 60349309 (-) True LOC110526081
XR_002473877.2 mRNA downstream 149195 60342589 ~ 60349298 (-) False LOC110526081
XR_002473875.2 mRNA downstream 149305 60342589 ~ 60349188 (-) False LOC110526081
LOC110532500 mRNA downstream 162272 60334984 ~ 60336221 (-) True LOC110532500
XM_036981581.1 mRNA upstream 26718 60525419 ~ 60538921 (-) True gdf10a
XM_036981604.1 mRNA upstream 161766 60660467 ~ 60690036 (-) False LOC110519525
XM_036981596.1 mRNA upstream 161766 60660467 ~ 60695525 (-) True LOC110519525
XM_036989748.1 mRNA upstream 196434 60695135 ~ 60707046 (-) True LOC110532522
XR_005052321.1 mRNA upstream 217243 60715944 ~ 60717300 (-) True LOC118964986
TU74240 other downstream 37259 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 1343348 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 1712876 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 3100005 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 3435645 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 1183577 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 1483030 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 1912821 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 2778507 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 3871201 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile