RNA id: TU74831


Basic Information

Item Value
RNA id TU74831
length 1794
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G67595
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61243450 ~ 61245243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctgaaacaATACTGCATTTTTTCCCCTCCAGTTTTATTTGTTGCAATGTGATACAAAAAAACTGTGTGTTTTAAGACCATGCAGAGGCCTCTGAGCGGttaggtaggctgtttggagtatTCAACCGGCTGGATTTAGTACAGGGCAGAAACCACAGAGCGgctgacaggctgtgtgaaggcaaagcttctgGAAGCAGAGTTGCCATGTCCACGGTTTTCCGGCAAAAATTGGGCTACTTTGAAAACGATGTTGCTggtgaaaatgtattggtcatGGGTTGTGGGTTTTTGTGCTATTTCTCAATTGCATCGCGGCCATCATGGCAATTAattttaaatatatacagtaccagtcaaaagtttggacacacctactcattcaagggttgttctttattgaAATGTTTTATGTTGTAGAATAactgtgaagacatcaaaactattaaataacacatatggaatcatgtagaccaaaaaagtgttaaacaaatccaaatatattttatatttgagatcctttgccttgatgacagctttgcacactcttcgcattctcgcaaccagcttcatgaggtagttacctggaatgcatttcaattaacaggtgtgccttgttaaaagttaatttgtggaatttctttccttcttaatacatttgagccaatcagttgtgtagtgacaaggtagggttggtatacagaagatctggtaaaagaccaaataagcaaagaaaaattacagtccatcattacagtccatcattacttaccCAGgacaagtgcagtcacaaaaaccataagcgctacgatgaaactggctctcatgaggaccgccacaggaaaggaagactctgctgcagaggatgagttcattagagttaactgcacctcagattccAGCACAAAtaattgcttcacagagttcaagtaacagacacatttcaacataaACTGCTCAGAATAGACTGcgttaatcaggccttcatggtcaaattgctgtaaagagaccactacttaaggacaccaataataagaagagacttgtttgggacAAGAAAcgtgagcaatggacattagacattagagtccaaatttgagatttttggttccaaccgccatgactttgtgagacgcagagtaggtgtaTGGATGATATCCCCATGTGTGGTTCaaatcgtgaagcatggaggaggaggtgtgatggtgggggggatgctttgctgggggcactaagtgatttatttagaattcaaggaattccacagcattctgcagcgatacgtcatcccatctggtttgcacttatgggactatcatttgtttttcaacaggacaatgacccaccacacctccaggctgtgtaagggctatttgaccaagaaggagagtgatggagtgctgcatcagataacctggccttccacaatcacccgacctcaacccaattgagatggtctgtgatgagttggaccgcagggtggctactttgaagaatttgtttaaaacttgtttggttactacatgattccatatgtgttattttatagtgtggatgtattcactattattctacaatgtagaaaatagtaaaaaataaacaaaaaccctgagtaggtgtgtccaaacttttgactgttactgtatttcactgtgacctgctgctgctgactatcagtgtcacggatccctctggaactttcattgcgcacacctggcccctattcctgTTTTACCATTTATGTTTTTCAATGCATCCCTAAGGGCTATAGTAGtcaaggccaaattcaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74830 lncRNA upstream 1573 61241562 ~ 61241877 (+) True G67594
TU74829 lncRNA upstream 2315 61240837 ~ 61241135 (+) True G67593
TU74828 lncRNA upstream 2842 61240232 ~ 61240608 (+) True G67592
TU74699 lncRNA upstream 16451 61117258 ~ 61226999 (+) True LOC110526122
TU74744 lncRNA upstream 113319 61091580 ~ 61130131 (+) True LOC110526134
TU74801 lncRNA downstream 1949 61247192 ~ 61263352 (+) True G67567
TU74799 lncRNA downstream 26387 61271630 ~ 61281369 (+) False G67566
TU74800 lncRNA downstream 26387 61271630 ~ 61273581 (+) True G67566
TU74859 lncRNA downstream 54933 61300176 ~ 61302265 (+) True G67622
TU75053 lncRNA downstream 74350 61319593 ~ 61319867 (+) True G67812
XM_021606759.2 mRNA upstream 16325 61117250 ~ 61227125 (+) False LOC110526122
XR_002473891.2 mRNA upstream 111445 61130106 ~ 61132005 (+) False LOC110526134
XM_021606732.2 mRNA upstream 741832 60496970 ~ 60501618 (+) False prdm8
XM_036981567.1 mRNA upstream 741832 60496970 ~ 60501618 (+) True prdm8
XM_021606709.2 mRNA upstream 815739 60403081 ~ 60427711 (+) True rrp12
XM_021606789.2 mRNA downstream 96862 61342105 ~ 61401098 (+) False lrrfip2
XM_021606873.2 mRNA downstream 96862 61342105 ~ 61401098 (+) False lrrfip2
XM_021606839.2 mRNA downstream 96960 61342203 ~ 61401098 (+) False lrrfip2
XM_021606796.2 mRNA downstream 96961 61342204 ~ 61401098 (+) False lrrfip2
XM_021606805.2 mRNA downstream 96961 61342204 ~ 61401098 (+) False lrrfip2
TU73321 other upstream 1301386 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 1918321 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 2543071 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 2577544 58665334 ~ 58665906 (+) True G64315
TU71238 other upstream 2655865 58586858 ~ 58587585 (+) True G64292
TU75047 other downstream 69631 61314874 ~ 61315252 (+) True G67806
TU75188 other downstream 484522 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 2029720 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 3564346 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 4670492 65915735 ~ 65922285 (+) False LOC110527164

Expression Profile