RNA id: TU75938



Basic Information


Item Value
RNA id TU75938
length 272
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G68613
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61329572 ~ 61329843 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgaacagagtgccccatggtggcggtggggttatggtatgggcagacatatgctacggacaacgaacacaatcgCATTTTGTCGATTGGGATTTGAATGCATATAGAGATACCGTGGCGAGATCCTggggcccattgtcatgccattcatccgccgccatcaccacatgtttcagcatgataatgcacagcctcatgttgcaaggatctgtacacaatttctggaagctgaaaatgtcccagttcttccatggcctgcatattccccagac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU75934 lncRNA downstream 6767 61322148 ~ 61322805 (-) True G68609
TU75045 lncRNA downstream 16676 61312637 ~ 61312896 (-) True G67804
TU75004 lncRNA downstream 86382 61242464 ~ 61243190 (-) True G67763
TU75003 lncRNA downstream 87628 61241325 ~ 61241944 (-) True G67762
TU74968 lncRNA downstream 99307 61184652 ~ 61230265 (-) True G67727
TU75943 lncRNA upstream 54452 61384295 ~ 61399594 (-) True G68617
TU76031 lncRNA upstream 166418 61496261 ~ 61496591 (-) True G68701
TU76033 lncRNA upstream 168831 61498674 ~ 61498984 (-) True G68703
TU76034 lncRNA upstream 169388 61499231 ~ 61499449 (-) True G68704
TU76035 lncRNA upstream 169962 61499805 ~ 61500046 (-) True G68705
XM_021604527.2 mRNA downstream 17595 61246276 ~ 61311977 (-) False abcc2
NM_001124655.1 mRNA downstream 18131 61246385 ~ 61311441 (-) True abcc2
XR_005052321.1 mRNA downstream 612272 60715944 ~ 60717300 (-) True LOC118964986
XM_036989748.1 mRNA downstream 622526 60695135 ~ 60707046 (-) True LOC110532522
XM_036981596.1 mRNA downstream 634047 60660467 ~ 60695525 (-) True LOC110519525
XM_021606940.2 mRNA upstream 73187 61403030 ~ 61418074 (-) True mlh1
XM_021606961.2 mRNA upstream 88536 61418379 ~ 61429118 (-) False LOC110526202
XM_036981742.1 mRNA upstream 88581 61418424 ~ 61429117 (-) False LOC110526202
XM_036981741.1 mRNA upstream 88581 61418424 ~ 61429118 (-) False LOC110526202
XM_036981748.1 mRNA upstream 88581 61418424 ~ 61429118 (-) False LOC110526202
TU74240 other downstream 868338 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2174427 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2543955 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 3931084 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 4266724 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 352435 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 651888 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 1081679 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1947365 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 3040059 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile