RNA id: TU75104



Basic Information


Item Value
RNA id TU75104
length 572
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G67855
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61417130 ~ 61417727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


accacaccccctgatTGATTGTAAATGCGGAAAGGGACCTACGAACGATAGGAGGAAAGATTCATCACTTGCTTTTGATAATGACTCATTTACTTTGGATCATGACAGTTTCACAAACATATCTATATAGGCATATTTACAGACGGATTTTCATTTTAAAAGTTGCATTCTGTATTTGcacaactgacacacacacacactgatagagTTATATATCCATAGAGCTAGCCAGCCAACTCGTTAAATAACGTTAGTACCATCAGACACAATTATAAACTCTTAGCTtgaacgctagctagctactgttgttGGCAATACGGCTAagttaacttaCCAGTTTTCAAGCAATTCTTTGATAGCATTTGCAGGACGTTGGATAACTTCTCCAGCAGCAATCCGATTAACAACGGTCTCATCGAGTCTCCGAATCACCCCGGACATACTGTTAGCTTTGATTCAGATTGTGAATATTATCAGAAGTAACACAAATAGCTGCTTAAATGGGACACCCTTACTTAATAAGAGTAGCTAGCTTAACATCCTACCACCATCACAACATGTTGTTAAAAGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU75096 lncRNA upstream 6514 61409429 ~ 61410616 (+) True G67847
TU75066 lncRNA upstream 13780 61365662 ~ 61403350 (+) True G67818
TU75076 lncRNA upstream 80172 61336626 ~ 61336958 (+) True G67828
TU75074 lncRNA upstream 89982 61326786 ~ 61327148 (+) True G67826
TU75069 lncRNA upstream 95625 61321213 ~ 61321505 (+) True G67821
TU75106 lncRNA downstream 5548 61423275 ~ 61428564 (+) True G67856
TU75154 lncRNA downstream 93908 61511635 ~ 61511835 (+) True G67897
TU75120 lncRNA downstream 123794 61541521 ~ 61544200 (+) False G67870
TU75122 lncRNA downstream 123970 61541697 ~ 61544200 (+) True G67870
TU75164 lncRNA downstream 152725 61570452 ~ 61571716 (+) True LOC110526250
XM_021606780.2 mRNA upstream 15323 61342204 ~ 61401807 (+) False lrrfip2
XM_021606813.2 mRNA upstream 16032 61342204 ~ 61401098 (+) False lrrfip2
XM_021606975.2 mRNA downstream 19880 61437607 ~ 61488427 (+) False LOC110526206
XM_036981774.1 mRNA downstream 19880 61437607 ~ 61488427 (+) False LOC110526206
XM_021606984.2 mRNA downstream 20252 61437979 ~ 61488427 (+) True LOC110526206
XM_021606997.2 mRNA downstream 83287 61501014 ~ 61505305 (+) True LOC110526212
XM_021607008.2 mRNA downstream 100226 61517953 ~ 61540937 (+) False herc4
TU75047 other upstream 101878 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 1475066 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 2092001 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 2716751 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 2751224 58665334 ~ 58665906 (+) True G64315
TU75188 other downstream 312038 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 1857236 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 3391862 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 4498008 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 4498008 65915735 ~ 65922285 (+) True LOC110527164

Expression Profile