RNA id: TU76031



Basic Information


Item Value
RNA id TU76031
length 331
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G68701
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61496261 ~ 61496591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccctatctgagatatctactgcagccctcatcctccacatacatcctcctcatcctccacgtTCTGACAGTCACATTCTATTAACGGTCTCGGAagtacacacatccctgggttgctcctcttttcagttcgctgcagctagcgactggaacgagctgcatcaaacactcaaactggacagttttatctcaatctcttcattcaaagactcaatcatggacactcttactgacagttgtggctgctttgcatgatgtattgttgtctctaccttcttgccctttgtgctgttgtctgtgaccaataatgttgtgttgctaccatgttgttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU75943 lncRNA downstream 96667 61384295 ~ 61399594 (-) True G68617
TU75938 lncRNA downstream 166418 61329572 ~ 61329843 (-) True G68613
TU75934 lncRNA downstream 173456 61322148 ~ 61322805 (-) True G68609
TU75045 lncRNA downstream 183365 61312637 ~ 61312896 (-) True G67804
TU75004 lncRNA downstream 253071 61242464 ~ 61243190 (-) True G67763
TU76033 lncRNA upstream 2083 61498674 ~ 61498984 (-) True G68703
TU76034 lncRNA upstream 2640 61499231 ~ 61499449 (-) True G68704
TU76035 lncRNA upstream 3214 61499805 ~ 61500046 (-) True G68705
TU76043 lncRNA upstream 12412 61509003 ~ 61509718 (-) True G68713
TU76075 lncRNA upstream 65334 61561925 ~ 61562283 (-) True G68742
XM_021606961.2 mRNA downstream 67143 61418379 ~ 61429118 (-) False LOC110526202
XM_036981741.1 mRNA downstream 67143 61418424 ~ 61429118 (-) False LOC110526202
XM_036981748.1 mRNA downstream 67143 61418424 ~ 61429118 (-) False LOC110526202
XM_036981753.1 mRNA downstream 67143 61418424 ~ 61429118 (-) False LOC110526202
XM_036981760.1 mRNA downstream 67143 61418424 ~ 61429118 (-) False LOC110526202
XM_021607047.2 mRNA upstream 45093 61541684 ~ 61544247 (-) True LOC110526243
XM_036938063.1 mRNA upstream 48087 61544678 ~ 61548916 (-) False dnajc12
NM_001160542.1 mRNA upstream 48094 61544685 ~ 61548656 (-) True dnajc12
XM_021607145.2 mRNA upstream 155717 61652308 ~ 61676927 (-) False tial1
XM_021607161.2 mRNA upstream 155717 61652308 ~ 61676935 (-) False tial1
TU74240 other downstream 1035027 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2341116 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2710644 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4097773 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 4433413 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 185687 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 485140 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 914931 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1780617 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2873311 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile