RNA id: TU76079



Basic Information


Item Value
RNA id TU76079
length 258
lncRNA type intronic
GC content 0.39
exon number 1
gene id G68746
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61565482 ~ 61565739 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACATAAATCcatctactttcatatcacatcaaaagaATTTCACAAAAGCCAAGTACACACTTACTGTACACCGTTTTAACACAGTTGCAGGTGAccgtatttttcagtgacaacacttttgtggcgtctgtcttccGTTTACATATGTGTTCAGAGAggcagatagctaattagcacaggtagaCCTCTCCGTCTTCTGAAAACAAGTgctgtaacatggaaatatgaCCATGTGGAAACCATAACCCTATAAAAAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU76078 lncRNA downstream 25 61565233 ~ 61565457 (-) True G68745
TU76077 lncRNA downstream 549 61564713 ~ 61564933 (-) True G68744
TU76075 lncRNA downstream 3199 61561925 ~ 61562283 (-) True G68742
TU76043 lncRNA downstream 55764 61509003 ~ 61509718 (-) True G68713
TU76035 lncRNA downstream 65436 61499805 ~ 61500046 (-) True G68705
TU76080 lncRNA upstream 814 61566553 ~ 61566831 (-) True G68747
TU76081 lncRNA upstream 1314 61567053 ~ 61567271 (-) True G68748
TU76082 lncRNA upstream 1856 61567595 ~ 61568656 (-) True G68749
TU76097 lncRNA upstream 3102 61568841 ~ 61571713 (-) False G68750
TU76094 lncRNA upstream 4235 61569974 ~ 61571713 (-) False G68750
XM_036938063.1 mRNA downstream 16566 61544678 ~ 61548916 (-) False dnajc12
NM_001160542.1 mRNA downstream 16826 61544685 ~ 61548656 (-) True dnajc12
XM_021607047.2 mRNA downstream 21235 61541684 ~ 61544247 (-) True LOC110526243
XM_036981753.1 mRNA downstream 136364 61418424 ~ 61429118 (-) False LOC110526202
XM_021607145.2 mRNA upstream 86569 61652308 ~ 61676927 (-) False tial1
XM_021607161.2 mRNA upstream 86569 61652308 ~ 61676935 (-) False tial1
XM_021607152.2 mRNA upstream 86569 61652308 ~ 61676936 (-) False tial1
XM_021607168.2 mRNA upstream 86569 61652308 ~ 61676942 (-) True tial1
XM_021607227.2 mRNA upstream 151715 61717454 ~ 61733606 (-) True LOC110526339
TU74240 other downstream 1104248 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2410337 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2779865 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4166994 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 4502634 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 116539 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 415992 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 845783 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1711469 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2804163 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile