RNA id: TU76097


Basic Information

Item Value
RNA id TU76097
length 1996
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G68750
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61568841 ~ 61571713 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCTCCAACATCCTCACAGGAAAACAATCACAACCAAGCTCGAGCATCACATTACACTTAAAACAGTGCAAAGAGCTGTATCAAATACTTTCACTCAACATAAACATGTAACAAAGGAAGGTCAAATTGATCATCATCTGGGCAACTTGAGAGAACAGCGGGATCATTCAACATCCACCTACTGTACATCATTTGACATCACTGTAACCAAATTCACAACATTTTCAAAATTTGATTGTAATCAATTGGCTCGGTGACTTGATATAATGCACAGGCTAATGCAGCTACAGCAGCAACATGGGGAGACTGACACCATCATTTCTGGAGTCACAATGCAACTTTTAATAACAGGGAATAAAAACATTGTGAATCATCTTTAGCGTGCTTGGCAAATATGATTTGGTTAGACAACAACTCAATAAAAGCTAAATGTAATCCTTTAAAAAATTATCTACACAACCTTTTCACAGTTTTAACCTAAACTTTACTCAAAATGTAACGGAACATGCTTTGCTGCTTTTTGTACCCATTGAGAAAGAAATACTATGTTAAGCCAGACAGATTTTATTCTGTAAATCCCAGATAAACAAGACTTGGGGGGTGGATTGGTTTAAAGTTGCCATGATAGAGATTTTAAATGTTAAGTCGACTAACAGGACATTTAGTTGTGTGCCGAGATTACAAAGACAAGCCCCTTTAGCTTAAAAATCACTGGGGAGAATCAAGACTGACCTGACTGATACAAAAGGGACACAATATTAGTTAAACAAGAGACAGGAATCAAGTGTTCTACACAACAACAATTGAGGAATAGCAGCAGACTGTCAGTTACTCAATCAGATCAATAAGACCAATAGGAGATCCGGGTGGTCCTGGTTAGAGATCAGGGCCATGTTCATTAGGAACaaaaagagggggaaaaaaatggaaAAGGGAGGGACTACCCAGATTTGTCCAATCAGAAACATTCCTTTTTGTTTTCCATTGTAAAATATATctgtccatttttttttttgttgccgcatgccctaatgaacacgacccatgATTGACACAGTATACAATATGTGGTGAAACTGGGATTCATGCCCATCcacctgtttttttttattgtatttatttaacttggcaagtcagttaagaaaatattcttatttacaatgacggcctaccccggccaagccctaacccggacgacgctgggccaattgtgcgccgccctatgggacctatgggactcccaatcgcggccggttgtgacacagcctggaatcaaaccaggtctgtagtgacgcctctagcactgagatgcagtgctttagaccgctgcgccactcgggagcctaaaATGGCATCTGTTAGGCAACTTGAATATCCCAACAAAGCAGAGCAGAAGGCACACTTTAATGGAAATAAACCTCGTAGTATCTTAACAATAAAGAAGATGAATTTATCATCATAAACTGAAAGAACAATGATGCACCATCATGAATTCACTGTGCTTTTCAGAGGAGGCAAAGAAACAGTGTCCACTACAACTCGTGTGGGTCAAAAATGAAGCTTGGCTGACGCTCACCCACTTCACTCAGCATCAGAGAATCTTCGTCATTCACAGTGTTTTGTCAATTTGGGTTGAGCCAGGTCGCTGACGGTCAGAGCATCtCTGGGAAAACCATTCAGAGATAGCTCCATTTGTAGTTTCTGGTCACGAGCAGCATAGTCAGAGAGCTGGGATTCCACTGTTGGGGGGTTGATTTGAGGAATGAATCCAGAGAAGACAGCTGGAGCTAAATGTGCCCAATCTGAAACAGGTAACCAATAGTCATTGTGGGAGACCCACAAATAGTGCTTAAACGCATATTTCTACAATCGTGCTCGACAGTTACAGTAGTTAAACGTCATTTTACAAGTGGATGTAACTATTTCGTTAGCAGCATGTGTTGTAGCATTTGAAAAAGACAGAGAAAGCGCTCACCGGGCCAAAGAGTATACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76082 lncRNA downstream 185 61567595 ~ 61568656 (-) True G68749
TU76081 lncRNA downstream 1570 61567053 ~ 61567271 (-) True G68748
TU76080 lncRNA downstream 2010 61566553 ~ 61566831 (-) True G68747
TU76079 lncRNA downstream 3102 61565482 ~ 61565739 (-) True G68746
TU76078 lncRNA downstream 3384 61565233 ~ 61565457 (-) True G68745
TU76101 lncRNA upstream 1088 61572801 ~ 61573204 (-) True G68752
TU76104 lncRNA upstream 2716 61574429 ~ 61575582 (-) True G68755
TU76107 lncRNA upstream 6021 61577734 ~ 61578211 (-) True G68758
TU76109 lncRNA upstream 8825 61580538 ~ 61580746 (-) True G68760
TU76113 lncRNA upstream 15073 61586786 ~ 61587006 (-) True G68764
XM_036938063.1 mRNA downstream 19925 61544678 ~ 61548916 (-) False dnajc12
NM_001160542.1 mRNA downstream 20185 61544685 ~ 61548656 (-) True dnajc12
XM_021607047.2 mRNA downstream 24594 61541684 ~ 61544247 (-) True LOC110526243
XM_036981753.1 mRNA downstream 139723 61418424 ~ 61429118 (-) False LOC110526202
XM_021607145.2 mRNA upstream 80595 61652308 ~ 61676927 (-) False tial1
XM_021607161.2 mRNA upstream 80595 61652308 ~ 61676935 (-) False tial1
XM_021607152.2 mRNA upstream 80595 61652308 ~ 61676936 (-) False tial1
XM_021607168.2 mRNA upstream 80595 61652308 ~ 61676942 (-) True tial1
XM_021607227.2 mRNA upstream 145741 61717454 ~ 61733606 (-) True LOC110526339
TU74240 other downstream 1107607 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2413696 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2783224 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4170353 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 4505993 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 110565 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 410018 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 839809 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1705495 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2798189 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile