RNA id: TU76109



Basic Information


Item Value
RNA id TU76109
length 209
lncRNA type intronic
GC content 0.46
exon number 1
gene id G68760
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61580538 ~ 61580746 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGTTGATGTTAGccacgaccagcctttcaaagcatttcatggctatatATGTGAGTGCTAAGGTGCAATAGTAGGCAGGTTACGTTGGCACGGGGTTCTTGAGCGAGATCatacagttgtccggaacagctggtgctctcatgcatggttcaatGATGCTTGCCTCGAAATCAGCATTGAAGGCATTTATCTTGTccgttttcccttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU76107 lncRNA downstream 2327 61577734 ~ 61578211 (-) True G68758
TU76104 lncRNA downstream 4956 61574429 ~ 61575582 (-) True G68755
TU76101 lncRNA downstream 7334 61572801 ~ 61573204 (-) True G68752
TU76097 lncRNA downstream 8825 61568841 ~ 61571713 (-) False G68750
TU76113 lncRNA upstream 6040 61586786 ~ 61587006 (-) True G68764
TU76120 lncRNA upstream 17726 61598472 ~ 61598708 (-) True G68771
TU76128 lncRNA upstream 27777 61608523 ~ 61609266 (-) True G68779
TU76131 lncRNA upstream 31655 61612401 ~ 61613659 (-) True G68782
TU76133 lncRNA upstream 36458 61617204 ~ 61617665 (-) True G68784
XM_036938063.1 mRNA downstream 31622 61544678 ~ 61548916 (-) False dnajc12
NM_001160542.1 mRNA downstream 31882 61544685 ~ 61548656 (-) True dnajc12
XM_021607047.2 mRNA downstream 36291 61541684 ~ 61544247 (-) True LOC110526243
XM_036981753.1 mRNA downstream 151420 61418424 ~ 61429118 (-) False LOC110526202
XM_021607145.2 mRNA upstream 71562 61652308 ~ 61676927 (-) False tial1
XM_021607161.2 mRNA upstream 71562 61652308 ~ 61676935 (-) False tial1
XM_021607152.2 mRNA upstream 71562 61652308 ~ 61676936 (-) False tial1
XM_021607168.2 mRNA upstream 71562 61652308 ~ 61676942 (-) True tial1
XM_021607227.2 mRNA upstream 136708 61717454 ~ 61733606 (-) True LOC110526339
TU74240 other downstream 1119304 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2425393 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2794921 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4182050 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 4517690 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 101532 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 400985 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 830776 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1696462 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2789156 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile