RNA id: TU76131


Basic Information

Item Value
RNA id TU76131
length 1259
lncRNA type antisense_over
GC content 0.57
exon number 1
gene id G68782
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61612401 ~ 61613659 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCACTCCTGGGCAGGCCCATCGAGTTGGTGGCTTGTGTGGTGTGTAGAGAGGGCAGGACAGAGCTGAGGAAGGCCACATGGTTCTGGATGGGGCTGGGGGTGGAGGTGCTGGAGGTCGGGGACGCTGCCTGTGGGGGTGACTGCTGTGGCAGGGTGAACACAGAGTTGAGGTAGGCAGCAGGCAAAAGggtgggggaggtgggggaggacaTGAAGGAAGGGGGGCTAGTGGGTGACTTGAGGACTCTGGTGGGGAAGACTCTGGGTTGTGGAGAGAACAGGTTGGGGTTGGAGGAGTTGAGCTCGGCAGCCAGCTCGTGGAGCAACGGAACTGGGGACTCTGTAGGGGAGGGACTCCTGACTGGAGAGAGGGGAGTCTGGGCAGTGATAAACTCTTTTGGCCTAGCATAGTTGAAGCTCTGTGAAATGGGAGCCAGGTTGAGGAGGGAGGCATGAGTTGTTctgagaaggggggagggggaggtgttCTGCATGGTTGTAGGGGCCCTGTTGAAAGCTGCAGGGATGGAGCTGAGAGTTGCTGTGGGGGCTGTATTCAGATGAGGTATGAGAGGTGTGTTAAACTGGGGTACGTGAATAGATTTAGGCAGGGATAAGGGGGCTAAGTTCAGCTGGGAAGAATGGGTGGTGTTTTGCAGGGTCATATAgggtggggatgcagggctggTATGCAGGTGGGGTGCAGGAACAGTACTCAGCAGAGGGGCAGATGGAGGGGAGCTCATACAAGATGAAGCTGTCTTCAGTTGAGGAGGGGATGGCAGGGTACCCATAATGGGTGCAGGAGGGGCTGTGTTCAGTAGTAGTGCAGAGGTAGTGTTTATTGGTGGTACAGGGCTTGTGTTTAGCAGGggtgaagaagaagaaagaaaataAGATTGGGTTGCGTATGGGTTCAGTAGTGGTGCAGAGGCAATGTTAAGCAGAGGTGCAGGGGCATTAGTGTTTAGCTGGGTTGCAGGGGTAGTGTTCAGTGTTGTCACAGGGGTGAAGTTGAGTAAGGGTGTTGGGGCTATGGTCAGTATGGGTGCGGGGTGGGTGGACTGCAGGGGCATGGGGGTAGATGAACGGGGTAGGCTTTGCTGgtgctggagctggggctggggctcaGGTTGCTTCCGGGCTGGCCAGGCAGATGCCTCCGGTTGACTCTGGGTGGCTCCGGTTGGCTCAGTGTCAGTCTGCTGCTGCTCCATAAGCACCTGGTTGTGTAGAAGCTGCAGCTGGACAGGGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76128 lncRNA downstream 3135 61608523 ~ 61609266 (-) True G68779
TU76120 lncRNA downstream 13693 61598472 ~ 61598708 (-) True G68771
TU76113 lncRNA downstream 25395 61586786 ~ 61587006 (-) True G68764
TU76109 lncRNA downstream 31655 61580538 ~ 61580746 (-) True G68760
TU76107 lncRNA downstream 34190 61577734 ~ 61578211 (-) True G68758
TU76133 lncRNA upstream 3545 61617204 ~ 61617665 (-) True G68784
TU76134 lncRNA upstream 5381 61619040 ~ 61619245 (-) True G68785
TU76136 lncRNA upstream 5839 61619498 ~ 61620050 (-) True G68787
TU76157 lncRNA upstream 34279 61647938 ~ 61648163 (-) True G68808
TU76073 lncRNA upstream 64159 61677818 ~ 61678103 (-) True G68740
XM_036938063.1 mRNA downstream 63485 61544678 ~ 61548916 (-) False dnajc12
NM_001160542.1 mRNA downstream 63745 61544685 ~ 61548656 (-) True dnajc12
XM_021607047.2 mRNA downstream 68154 61541684 ~ 61544247 (-) True LOC110526243
XM_036981753.1 mRNA downstream 183283 61418424 ~ 61429118 (-) False LOC110526202
XM_021607145.2 mRNA upstream 38649 61652308 ~ 61676927 (-) False tial1
XM_021607161.2 mRNA upstream 38649 61652308 ~ 61676935 (-) False tial1
XM_021607152.2 mRNA upstream 38649 61652308 ~ 61676936 (-) False tial1
XM_021607168.2 mRNA upstream 38649 61652308 ~ 61676942 (-) True tial1
XM_021607227.2 mRNA upstream 103795 61717454 ~ 61733606 (-) True LOC110526339
TU74240 other downstream 1151167 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2457256 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2826784 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4213913 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 4549553 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 68619 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 368072 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 797863 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1663549 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2756243 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile