RNA id: TU76133


Basic Information

Item Value
RNA id TU76133
length 462
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G68784
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61617204 ~ 61617665 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtGCTGATAGCGCAACActaaggttgtgggttcaatttctGATGGGATCACATACTAAGAACCTTTGTACTCCCTGTACTGTAAGTTACTTTGGATGAAAACCTCTGCTAAAAAAAACAGTGTGGGTGAAAACATATCTAGAGACCATAGGCGTGCTGTCTCACCTTCGGTACGGGGATCCCCACCACTTTACAGGAGAACGTCATAGGGACACCCTCCATAGCCCTGAAGTTCCTCAGCTTCCTGTCGAATATGGGCGCGACGCACTTCCCTGTCGGGCTCTCATCGTGTTGTACCTCGTCATCCGACTCCTCGACTGGCGTGCGCTCCAGACGGAACTCTATCTCACTCAACAGCCTCTGCTCAAAGTTGGACACTTTGTACTCCTAAAAAGACATGTCAGAAACTGTTTGGGTGAGTATTTACTTGAGTGGATTGACAGAGGAATCAGACCCAGAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76131 lncRNA downstream 3545 61612401 ~ 61613659 (-) True G68782
TU76128 lncRNA downstream 7938 61608523 ~ 61609266 (-) True G68779
TU76120 lncRNA downstream 18496 61598472 ~ 61598708 (-) True G68771
TU76113 lncRNA downstream 30198 61586786 ~ 61587006 (-) True G68764
TU76109 lncRNA downstream 36458 61580538 ~ 61580746 (-) True G68760
TU76134 lncRNA upstream 1375 61619040 ~ 61619245 (-) True G68785
TU76136 lncRNA upstream 1833 61619498 ~ 61620050 (-) True G68787
TU76157 lncRNA upstream 30273 61647938 ~ 61648163 (-) True G68808
TU76073 lncRNA upstream 60153 61677818 ~ 61678103 (-) True G68740
TU76074 lncRNA upstream 60526 61678191 ~ 61679786 (-) True G68741
XM_036938063.1 mRNA downstream 68288 61544678 ~ 61548916 (-) False dnajc12
NM_001160542.1 mRNA downstream 68548 61544685 ~ 61548656 (-) True dnajc12
XM_021607047.2 mRNA downstream 72957 61541684 ~ 61544247 (-) True LOC110526243
XM_036981753.1 mRNA downstream 188086 61418424 ~ 61429118 (-) False LOC110526202
XM_021607145.2 mRNA upstream 34643 61652308 ~ 61676927 (-) False tial1
XM_021607161.2 mRNA upstream 34643 61652308 ~ 61676935 (-) False tial1
XM_021607152.2 mRNA upstream 34643 61652308 ~ 61676936 (-) False tial1
XM_021607168.2 mRNA upstream 34643 61652308 ~ 61676942 (-) True tial1
XM_021607227.2 mRNA upstream 99789 61717454 ~ 61733606 (-) True LOC110526339
TU74240 other downstream 1155970 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2462059 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2831587 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4218716 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 4554356 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 64613 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 364066 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 793857 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1659543 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2752237 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile