RNA id: TU76074


Basic Information

Item Value
RNA id TU76074
length 1596
lncRNA type intronic
GC content 0.40
exon number 1
gene id G68741
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61678191 ~ 61679786 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataatttacacttttacttttgatacgtaagtacatttgagcaattccatttacttttgatacttaagtatatttaaaacaaaatacttttgctcaagtagtattttactgggtgactttcacttgagtcattttctattaaggtatctttactttcactcaagtatcATAATTGAgtcatttttccaccactgcacgtGACCACCCTACTGAAGCATCTTACCAGTCAGTGCCAAGCAAAAAGCTAGCTATTCACTGGTGCAAGTGGGAACATTGCAGGCTGAGAAGTAAGcctcacacatccccatgtgctacacTTACATACTTCAACAAGGTGTGGCTCAAACTAAAATCAAACTGTCCAAACTGGAAGCATGTCctacagacagagctgaaacaaCAAACTGTATGTGTGGGTAGTGCGTGACAAAGCACCAGACTCCACTGGTACATGATGTAAAATAGCCTAGGTTTAGACAAGTGGGAGCAACCCACTGAGCAAAAGTCTATATAAGTCCAGTCTACACAGTTTAGCACGACAAAGACAAGTGTCCACAAGACTGTGTAGGCCCATTGGACCTACTGCATTGGAACAGTCCCAAGCTCCTCATGACTATTTAATTAGTCTGGTAATAAATCATTCAAATTAATGAATTCAAATGATTAATTATTCAATTAATTTGAAATAAGTACTGTGTGAGGCATAGTGTTGTACTTTTTAATTTACATCATTCCCGTTATGCTTTTTTGATACAACAACAGTAGTTGTGAAACTCTGAACGACCTTTTGCCCTCTGCCATTTTGGCAGGGTCCCTGTACACTGCCAGCATCGCACCAATTTTATCTCCTGACAGCTGTGTCTTTCTAGCAGATTCTTAGTGACACTAACTTTGGACGGCAGCAAGTGTTGATCTTCCTAATGCAAGATGCCAACCTAGGTAGGGTCTGCTTCCCCAACCCTTCAACACTTAAGTTGACACAGTTCTTCAGGACACAGATATGGTGTAAAACCATATCACCAATTTTTGTGATTTGTTAATTTCAATGGATTGTAGATTACTTGGAGCTGTTATATATGCGCAGTAGGCTACTGGAGTTGGGTGGTTGATGAACCCACCTCAAATCCCTTTTAAGGAAAAGTTTTAGTAACGGGTATACGAAATATGAACAAGCGCATTCTACATGGCCTAATAGGCTTTAAATAAACATTATGGAGATGTCCAAACACTCAAAGCCATGGCTTTACATATGACTGCAGTGCGTCATCAACCAACCAGCCACGCTTAGATCATCACACAAGAACATAACCTAACAGCCATTGCCCGTTATTTAACCCGTTATAATGCATGACGGAGAGGGCTGGAGCCTAAAAGAGACAACATTCCATTGCGTTGGCGTATATGAAGTCTAAGCAGATACGAAGTTTGAGCAGTGGCAAGTTGTAACATATGGTTTCTAAATGttaaagaaaaggagagagaagttTAGCCTACTATAAATAGAATATGCCCACTCTGTCTTCCTATAATAAAAGCCAGTGCGTATCAGAGGCAGTGACCATAATTAACCACTGAAGCGCTTGGTCGACGGCCATg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76073 lncRNA downstream 88 61677818 ~ 61678103 (-) True G68740
TU76157 lncRNA downstream 30028 61647938 ~ 61648163 (-) True G68808
TU76136 lncRNA downstream 58141 61619498 ~ 61620050 (-) True G68787
TU76134 lncRNA downstream 58946 61619040 ~ 61619245 (-) True G68785
TU76133 lncRNA downstream 60526 61617204 ~ 61617665 (-) True G68784
TU76070 lncRNA upstream 1428 61681214 ~ 61682107 (-) True G68737
TU76226 lncRNA upstream 113213 61792999 ~ 61793359 (-) True G68869
TU76280 lncRNA upstream 177734 61857520 ~ 61944106 (-) True G68921
TU76308 lncRNA upstream 225688 61905474 ~ 61905894 (-) True G68949
TU76268 lncRNA upstream 255727 61935513 ~ 61936398 (-) True G68910
XM_021607168.2 mRNA downstream 1249 61652308 ~ 61676942 (-) True tial1
XM_021607152.2 mRNA downstream 1255 61652308 ~ 61676936 (-) False tial1
XM_021607161.2 mRNA downstream 1256 61652308 ~ 61676935 (-) False tial1
XM_021607145.2 mRNA downstream 1264 61652308 ~ 61676927 (-) False tial1
NM_001160542.1 mRNA downstream 129535 61544685 ~ 61548656 (-) True dnajc12
XM_021607227.2 mRNA upstream 37668 61717454 ~ 61733606 (-) True LOC110526339
XM_021607241.2 mRNA upstream 67017 61746803 ~ 61755455 (-) False csgalnact2
XR_005052459.1 mRNA upstream 67023 61746809 ~ 61755455 (-) False csgalnact2
XR_002473934.2 mRNA upstream 68067 61747853 ~ 61755455 (-) True csgalnact2
XM_036981852.1 mRNA upstream 78584 61758370 ~ 61789951 (-) False ret
TU74240 other downstream 1216957 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 2523046 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 2892574 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 4279703 57397194 ~ 57398488 (-) True G63328
TU69997 other downstream 4615343 57052098 ~ 57062848 (-) False G63093
TU76069 other upstream 2492 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 301945 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 731736 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1597422 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2690116 64369902 ~ 64381356 (-) True LOC110526867

Expression Profile