RNA id: TU76466



Basic Information


Item Value
RNA id TU76466
length 1179
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G69071
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62170950 ~ 62173859 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGAGGTGGACAATAAATACATTCTGGTTTGTGCCTTCCAATTTTGTTATCCAATGGATCACTGGCATTTCCTAACACATTTCCACTCCAAGACCTTAATGTAAGTAAATCCATGCCACATGCCAAAATAATAAGCTTTTGgggagacagtgtgtgtgagagagaggtggacaaTAAATACATACACCGAATGCATTTGAAGCAGTCATATCAAGCAGTGCCATTCTTTGCTTTTTACATCATCTGCATTGTTGTTCCCAAAATAATACTTTGTATACCAACATACACACCATATTAATATGTTCTCAGTATCACAATCAAACAGTTTTCTAATCAATCCAATCTTTACATCAAACCCATATGCCCACCCATCCTGACATCTAAAACTTTGAATAAcgtataaaaaaacaaaatgctAGTCTTGTGAAAACTTGCGCCCACCTTAGTTAACAGCAGCGAAGGTTAAGGGAAAAACAGACAGGGAAAAGTATAGTGACACCACCACCATACAAAGAATAGGCATTTGGAGACATTCCCGCCTGTATTATTGTACAATCAATCTGGACTTTGATCAAATACTGTTATTTTCGTTCTCAGAATGTGCTATAATATGAGCCACTGTGGTCAAGCAAAGATGATTTGACATGCAATTTGATATGAAAGCTAACTGCAGTGTGATAATGATTGACTAAGTAAAAGTACACCAATGTTGTGCTATGGAAGTAACTCATGGAGAAAGTATCAGAATATTAGCTGTACACAACGAAGGCATGGACATAAAATGTAAAATTTTCCTgtaatttttttttggggggggaattaTAGTAAAAACATTAGCTGAGTATTTTGTCTGGATAAACCTGATATTTTAAAATGATGAAAAGCAGCAAAAATAATAACCTAATTCTATCAGTATAATGAATGAAAGCACAATTTGGCGCCTACATGACATTCGATGTAGGACGATTCAGGTAAAGATCAACaagaataaatacatttttttcgaaccaaaaaaaactaaaatgtaaTAGAGGTTAACAATTTGTACACAATAggcataaaaaaacaacaaaagtgTGTCTCATTGATGTTCGCTAGGACAAGCTTTACTAAAAGCAGCTATGGCATTTTATGGAATACCATTGAATTCTCTATGTCCTAGTTAATTGTGATTGGGAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU76336 lncRNA downstream 127410 62000905 ~ 62043540 (-) True G68974
TU76324 lncRNA downstream 190037 61980609 ~ 61980913 (-) True G68965
TU76321 lncRNA downstream 199033 61971519 ~ 61971917 (-) True G68962
TU76275 lncRNA downstream 205734 61964752 ~ 61965216 (-) True LOC110526377
TU76268 lncRNA downstream 234552 61935513 ~ 61936398 (-) True G68910
TU76607 lncRNA upstream 193398 62367257 ~ 62370460 (-) False LOC110526498
TU76608 lncRNA upstream 193398 62367257 ~ 62370460 (-) True LOC110526498
TU76549 lncRNA upstream 230694 62404553 ~ 62405932 (-) True G69149
TU76548 lncRNA upstream 248051 62421910 ~ 62428036 (-) True LOC110526526
TU76630 lncRNA upstream 262327 62436186 ~ 62436564 (-) True G69215
XM_036981964.1 mRNA downstream 143413 62006400 ~ 62027537 (-) True LOC110526424
XR_002473938.2 mRNA downstream 166333 61920972 ~ 62004617 (-) False LOC110526377
XM_021607324.2 mRNA downstream 166335 61920972 ~ 62004615 (-) False LOC110526377
XM_021607304.2 mRNA downstream 166336 61920972 ~ 62004614 (-) False LOC110526377
XM_021607332.2 mRNA downstream 166336 61920972 ~ 62004614 (-) False LOC110526377
XM_021607444.2 mRNA upstream 136624 62310483 ~ 62315483 (-) True LOC110526449
XM_021607452.2 mRNA upstream 149574 62323433 ~ 62351491 (-) False LOC110526460
XM_021607460.2 mRNA upstream 149574 62323433 ~ 62351491 (-) False LOC110526460
XM_021607469.2 mRNA upstream 149574 62323433 ~ 62351491 (-) False LOC110526460
XM_021607475.2 mRNA upstream 149574 62323433 ~ 62351491 (-) False LOC110526460
TU76326 other downstream 188555 61981731 ~ 61982395 (-) True LOC110526417
TU76069 other downstream 484642 61682278 ~ 61686308 (-) True G68736
TU74240 other downstream 1709716 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 3015805 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 3385333 58784742 ~ 58785617 (-) True G65147
TU76624 other upstream 237663 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 1103349 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 2196043 64369902 ~ 64381356 (-) True LOC110526867
TU82292 other upstream 4644985 66818844 ~ 66822816 (-) False tjap1
TU82368 other upstream 4820823 66994682 ~ 67010587 (-) True LOC110527436

Expression Profile