RNA id: TU75802



Basic Information


Item Value
RNA id TU75802
length 319
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G68479
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62540115 ~ 62540433 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atgtttttagtttttaggggtgcaactgcatctagggtattgcgcaaggttaaattgagttcctcagttaggtggttaactgatttttgtcctctggcgtccttgggtagacagagggaatctggaaggacatcaaggaatctttgtgttgtctgtgaatttatagcatgacttttgatgttccttggttggggtctgagcagattatttgttgcaattgcaaacgtaataaaatggtggtctgatagtccaggattatgaggaaaaacattaagatccacatttattccatgggacaaaactaggtccagagtatgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU75785 lncRNA upstream 4174 62535608 ~ 62535941 (+) True G68472
TU75782 lncRNA upstream 7577 62532169 ~ 62532538 (+) True G68469
TU75678 lncRNA upstream 123991 62414680 ~ 62416124 (+) True G68384
TU75404 lncRNA upstream 557194 61981733 ~ 61982921 (+) True G68132
TU75402 lncRNA upstream 562052 61977849 ~ 61978063 (+) True G68130
TU75823 lncRNA downstream 27920 62568353 ~ 62568619 (+) True G68498
TU75800 lncRNA downstream 69316 62609749 ~ 62610025 (+) True G68477
TU75801 lncRNA downstream 72232 62612665 ~ 62617264 (+) True G68478
TU75855 lncRNA downstream 79885 62620318 ~ 62620552 (+) True G68530
TU75787 lncRNA downstream 85966 62626399 ~ 62630539 (+) True LOC110526580
XM_021607603.2 mRNA upstream 13813 62505171 ~ 62526302 (+) True LOC110526548
XM_036982179.1 mRNA upstream 47204 62460060 ~ 62492911 (+) False LOC110526533
XM_021607652.2 mRNA downstream 45431 62585864 ~ 62608428 (+) False LOC110526555
XM_021607617.2 mRNA downstream 45432 62585865 ~ 62608428 (+) False LOC110526555
XM_021607644.2 mRNA downstream 45432 62585865 ~ 62608428 (+) False LOC110526555
XM_021607661.2 mRNA downstream 45434 62585867 ~ 62608428 (+) False LOC110526555
XM_021607625.2 mRNA downstream 45604 62586037 ~ 62608428 (+) False LOC110526555
TU75188 other upstream 806727 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 1224863 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 2598051 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 3214986 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 3839736 58699296 ~ 58700379 (+) True G64338
TU77508 other downstream 734530 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 2269156 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 3375302 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 3375302 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 3747246 66287679 ~ 66288469 (+) True G73515

Expression Profile