RNA id: TCONS_00026654


Basic Information

Item Value
RNA id TCONS_00026654
length 936
RNA type mRNA
GC content 0.46
exon number 6
gene id XLOC_013534
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 35429333 ~ 35459996 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATATCGAACCCACCAGTCTGTCCCCCAGTATGTTCGCAAGTCCCGATGAACTAACAGGGGCAAAATCGTGGAGGAAGTTAAAGAGCATGGTGCACTGCTCTCCGTTTGTGGTTTCCTTTAAGAAACGATATCCTTGGGTTCAGCTGGCAGGACACGCAGgAAGTTTCCAGGCAGGAGAGAACGGGAAGCTGTTGAAGAAGTATTGTGAATGTGAGCAGCAGTGTCTGGAGAAGCTGATGAATGATGACCTTCGGCCATTTGTACCCGGTTATTATGGTGTGGTTCAGCAGAACGAGCAGGATTACAACATAATGGATGATCTGCTCAAAGACTTTGACTCTCCTTCAATCATGGACTGCAAAATGGGAAGCAGGACATACCTGGAGGAAGAGCTGGTAAAGGCCCGTGAGCGTCCTCGGCTCAGAAAGGACATGTATGAGAAAATGGTGGCTGTTGACCCAACCGCTCCTAGTCCAGAGGAAAGATCCCAGCAGGCTGTTCTCAAACCTCGATACATGCAGTGGAGAGAAACTCTGAGCTCCACTGCCACACTCGGCTTCCGCATAGAGGGAATCAAGAAAGCAGATGGAACATGCAACACCAGCTTTAAGAAAACCAAACATGAAGAGCAAGTAATGAAGGCCTTCGGAGACTTTGTGGATGGAAACACAAACTTACTGaggaATTATCTTCTTAGGCTGGAAGAGCTGCGCTGCGCTCTGGAAAACTCACACTTCTTCAGGACACATGAGGTGAGGGATTGTGTAATCTTGTCCTGCCTGAGCCAAATTCTTTCAACTCTGGAACATCATAAATCATGTTTCGTAAGCTCAGATGTTTGTCCGGTTAATGTACATTTTAAGAAAAGTACAAAGTGTTCTAAGCATACTGTATGCTACTGTTAATACCCACTTAATGTTGTAAAAAACAGTATC

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0032958 inositol phosphate biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000828 inositol hexakisphosphate kinase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080225-27 Predicted to enable inositol hexakisphosphate kinase activity. Predicted to be involved in inositol phosphate biosynthetic process and phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in hatching gland; nervous system; neural crest; otic vesicle; and somite. Orthologous to human ITPKC (inositol-trisphosphate 3-kinase C).

Ensembl:

ensembl_id ENSDART00000135691

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027372 lncRNA downstream 181204 35251298 ~ 35254022 (-) True XLOC_013531
TCONS_00026981 lncRNA downstream 547154 34886240 ~ 34888072 (-) True XLOC_013530
TCONS_00026980 lncRNA downstream 880609 34551541 ~ 34554617 (-) True XLOC_013529
TCONS_00027371 lncRNA downstream 880695 34551528 ~ 34554531 (-) False XLOC_013529
TCONS_00027370 lncRNA downstream 881570 34551528 ~ 34553656 (-) False XLOC_013529
TCONS_00026982 lncRNA upstream 84671 35544276 ~ 35548058 (-) False XLOC_013535
TCONS_00026983 lncRNA upstream 101664 35561269 ~ 35565396 (-) False XLOC_013535
TCONS_00026984 lncRNA upstream 102404 35562009 ~ 35565285 (-) True XLOC_013535
TCONS_00027373 lncRNA upstream 1255034 36714639 ~ 36733902 (-) True XLOC_013542
TCONS_00027374 lncRNA upstream 1389544 36849149 ~ 36887252 (-) False XLOC_013543
TCONS_00026652 mRNA downstream 27436 35405090 ~ 35407790 (-) True XLOC_013533
TCONS_00026650 mRNA downstream 27531 35403045 ~ 35407695 (-) False XLOC_013533
TCONS_00026651 mRNA downstream 27696 35405090 ~ 35407530 (-) False XLOC_013533
TCONS_00026649 mRNA downstream 27937 35402759 ~ 35407289 (-) False XLOC_013533
TCONS_00026648 mRNA downstream 44491 35375229 ~ 35390735 (-) True XLOC_013532
TCONS_00026655 mRNA upstream 31868 35491473 ~ 35736591 (-) False XLOC_013535
TCONS_00026657 mRNA upstream 347983 35807588 ~ 35837673 (-) True XLOC_013537
TCONS_00026658 mRNA upstream 379147 35838752 ~ 35842554 (-) True XLOC_013538
TCONS_00026659 mRNA upstream 600690 36060295 ~ 36066087 (-) False XLOC_013539
TCONS_00026660 mRNA upstream 603400 36063005 ~ 36066087 (-) True XLOC_013539
TCONS_00026632 other downstream 2341485 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026625 other downstream 2908122 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026611 other downstream 4579691 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026599 other downstream 5516121 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026598 other downstream 5536865 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026656 other upstream 113576 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 995702 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026673 other upstream 1950218 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026691 other upstream 3726569 39186174 ~ 39188401 (-) True XLOC_013560
TCONS_00026695 other upstream 4126941 39586546 ~ 39586665 (-) True XLOC_013565

Expression Profile

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