RNA id: TU76953


Basic Information

Item Value
RNA id TU76953
length 239
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G69507
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62882937 ~ 62883175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTTTTATTGTAACCCTAGTTGCCCTGAAAAGAAAATGATCAAATGCTTCATTGTGATgctaaatataagggctggacaaaAACACAGATTTTAACTGGGGTCCTCGGGCCTGATGAGGTTAATTAATGTACCTTAACAGAGGAGTGACTTGTACTTTATTGGCTTCAGATACATGTTGCTATCCCCCAGAGTTCAGCCtgcagtcagagacagacagacagacagacagacagacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76898 lncRNA upstream 5693 62817366 ~ 62877244 (+) True G69461
TU75880 lncRNA upstream 217462 62665132 ~ 62665475 (+) True G68555
TU75872 lncRNA upstream 223788 62658921 ~ 62659149 (+) True G68547
TU75787 lncRNA upstream 252398 62626399 ~ 62630539 (+) True LOC110526580
TU75855 lncRNA upstream 262385 62620318 ~ 62620552 (+) True G68530
TU76957 lncRNA downstream 6901 62890076 ~ 62890408 (+) True G69511
TU76962 lncRNA downstream 12978 62896153 ~ 62896368 (+) True G69516
TU76963 lncRNA downstream 13611 62896786 ~ 62897000 (+) True G69517
TU76965 lncRNA downstream 14889 62898064 ~ 62898289 (+) True G69519
TU76967 lncRNA downstream 16193 62899368 ~ 62899592 (+) True G69521
XM_021607771.2 mRNA upstream 8282 62864201 ~ 62874655 (+) False LOC110526628
XM_021607763.2 mRNA upstream 8282 62864214 ~ 62874655 (+) False LOC110526628
XM_036982370.1 mRNA upstream 8282 62871947 ~ 62874655 (+) True LOC110526628
XM_036955606.1 mRNA upstream 142945 62735771 ~ 62739992 (+) False cyp1b1
NM_001174149.1 mRNA upstream 144152 62736341 ~ 62738785 (+) True cyp1b1
XM_021607789.2 mRNA downstream 40814 62923989 ~ 62948072 (+) True LOC110526643
XM_036982416.1 mRNA downstream 100768 62983943 ~ 63024360 (+) False ide
XM_036982397.1 mRNA downstream 100768 62983943 ~ 63030621 (+) False ide
XM_036982406.1 mRNA downstream 101011 62984186 ~ 63030621 (+) False ide
XM_036982424.1 mRNA downstream 101855 62985030 ~ 63030621 (+) True ide
TU75188 other upstream 1149549 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 1567685 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 2940873 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 3557808 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 4182558 58699296 ~ 58700379 (+) True G64338
TU77508 other downstream 391788 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 1926414 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 3032560 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 3032560 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 3404504 66287679 ~ 66288469 (+) True G73515

Expression Profile