RNA id: TU77533



Basic Information


Item Value
RNA id TU77533
length 331
lncRNA type intronic
GC content 0.48
exon number 1
gene id G70035
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 63330887 ~ 63331217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtatagtctaccccgggagggggtggttcccggaaggagatcaatactacaatcatacgaccggtgtggaggaagagaggtggccctggaccgactgaacaccgtgcgcagatcgtgatattcctctggcacccctgtcaaatcaccaggctcctcctgtgaagaagagacagaggaaacaggagggatagcagacattaaacatttcacatgacaagagacgttccaggagaggatagaattactagaccaattaatggaaggattatgacaaactagccagggatggcccaaaacaacaggtgtaaaaggtgaacgaaaaattaaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77532 lncRNA upstream 2830 63327853 ~ 63328057 (+) True G70034
TU77526 lncRNA upstream 8077 63322509 ~ 63322810 (+) True G70028
TU77519 lncRNA upstream 17550 63299942 ~ 63313337 (+) True G70021
TU77518 lncRNA upstream 38760 63289815 ~ 63292127 (+) True LOC110526727
TU77509 lncRNA upstream 53088 63277369 ~ 63277799 (+) True G70012
TU77777 lncRNA downstream 178835 63510052 ~ 63510427 (+) True G70267
TU77792 lncRNA downstream 189348 63520565 ~ 63520959 (+) True G70282
TU77794 lncRNA downstream 192869 63524086 ~ 63529066 (+) True G70284
TU77810 lncRNA downstream 224392 63555609 ~ 63555849 (+) True G70300
TU77918 lncRNA downstream 297051 63628268 ~ 63628595 (+) True G70399
XM_021607888.2 mRNA upstream 40986 63283327 ~ 63289901 (+) False LOC110526727
XM_036982537.1 mRNA upstream 85442 63239050 ~ 63245445 (+) True LOC118965245
XM_036982500.1 mRNA upstream 91650 63225088 ~ 63239237 (+) False LOC110526701
XM_036982605.1 mRNA downstream 2472 63333689 ~ 63471138 (+) False LOC110526770
XM_021607961.2 mRNA downstream 2472 63333689 ~ 63499450 (+) True LOC110526770
XM_021607970.2 mRNA downstream 234286 63565503 ~ 63598806 (+) False LOC110526778
XM_021607977.2 mRNA downstream 234286 63565503 ~ 63598806 (+) True LOC110526778
XR_002474022.2 mRNA downstream 289020 63620237 ~ 63621429 (+) True LOC110526795
TU77508 other upstream 55591 63274963 ~ 63275296 (+) True G70011
TU75188 other upstream 1597499 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 2015635 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 3388823 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 4005758 59324636 ~ 59325129 (+) True G65442
TU79281 other downstream 1478372 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 2584518 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 2584518 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 2956462 66287679 ~ 66288469 (+) True G73515
TU81346 other downstream 3089278 66420495 ~ 66424081 (+) True LOC118965274

Expression Profile