RNA id: TU77990



Basic Information


Item Value
RNA id TU77990
length 224
lncRNA type intronic
GC content 0.44
exon number 1
gene id G70465
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 63733965 ~ 63734188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGTAAACATACGATCTTCCACATCATATCCATCAAGAAATAAGAACGCTAGCCGAGCTCCGTGGATTTGGCTGCACTGTGACCATTCGTAAAACGGCATGGGGCAGTTGAAACCAGTAGCGAGGTGAATAGGAGGTTAGGACCAAATGTTTTCACATCCCTCCACTTCAAGACATATGAAAGTTAGCGCCATTGATTTGGCTGCACTGTGATCAACGCAGCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77986 lncRNA upstream 534 63728899 ~ 63733431 (+) True G70462
TU77961 lncRNA upstream 48400 63685353 ~ 63685565 (+) True G70438
TU77957 lncRNA upstream 54965 63676126 ~ 63679000 (+) True G70434
TU77918 lncRNA upstream 105370 63628268 ~ 63628595 (+) True G70399
TU77810 lncRNA upstream 178116 63555609 ~ 63555849 (+) True G70300
TU77992 lncRNA downstream 4398 63738586 ~ 63738796 (+) True G70467
TU78048 lncRNA downstream 86932 63821120 ~ 63821353 (+) True G70522
TU78050 lncRNA downstream 91440 63825628 ~ 63825898 (+) True G70524
TU78051 lncRNA downstream 92649 63826837 ~ 63827044 (+) True G70525
TU78053 lncRNA downstream 94026 63828214 ~ 63828436 (+) True G70527
XR_002474022.2 mRNA upstream 112536 63620237 ~ 63621429 (+) True LOC110526795
XM_021607970.2 mRNA upstream 135159 63565503 ~ 63598806 (+) False LOC110526778
XM_021607977.2 mRNA upstream 135159 63565503 ~ 63598806 (+) True LOC110526778
XM_021607961.2 mRNA upstream 234515 63333689 ~ 63499450 (+) True LOC110526770
XM_036982605.1 mRNA upstream 262827 63333689 ~ 63471138 (+) False LOC110526770
XR_005052510.1 mRNA downstream 246945 63981133 ~ 63998301 (+) False LOC118965254
XM_021608067.2 mRNA downstream 734335 64468523 ~ 64471084 (+) False LOC110526877
XM_021608072.2 mRNA downstream 734336 64468524 ~ 64471084 (+) True LOC110526877
XM_021608102.2 mRNA downstream 1039727 64773915 ~ 64783202 (+) False LOC110526912
XM_021608095.2 mRNA downstream 1039947 64774135 ~ 64783737 (+) True LOC110526912
TU77508 other upstream 458669 63274963 ~ 63275296 (+) True G70011
TU75188 other upstream 2000577 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 2418713 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 3791901 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 4408836 59324636 ~ 59325129 (+) True G65442
TU79281 other downstream 1075401 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 2181547 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 2181547 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 2553491 66287679 ~ 66288469 (+) True G73515
TU81346 other downstream 2686307 66420495 ~ 66424081 (+) True LOC118965274

Expression Profile