RNA id: TU78050



Basic Information


Item Value
RNA id TU78050
length 271
lncRNA type intronic
GC content 0.41
exon number 1
gene id G70524
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 63825628 ~ 63825898 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cactaggccctccatggaatgagatTGACACCCCTGATTCAAGCTGTCATCTGAACAGTTTCAAGTCACTTCTTGCAAATCACTCCTCAGAATTTGACAAATCCCTGCTTTCAAAACACTGAAAAGCACTCACATCTCACAGGCTTAAATAATACCGGGTCAGGAATAGCAGCTAACAATATGTATAGTTTCCCATCAAATTGCATGTTACCAAATTGCTTCACTGATGACATCTCAGGGAAATTAGCACCCAAAGTCCAGCATTTATGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU78048 lncRNA upstream 4275 63821120 ~ 63821353 (+) True G70522
TU77992 lncRNA upstream 86832 63738586 ~ 63738796 (+) True G70467
TU77990 lncRNA upstream 91440 63733965 ~ 63734188 (+) True G70465
TU77986 lncRNA upstream 92197 63728899 ~ 63733431 (+) True G70462
TU77961 lncRNA upstream 140063 63685353 ~ 63685565 (+) True G70438
TU78051 lncRNA downstream 939 63826837 ~ 63827044 (+) True G70525
TU78053 lncRNA downstream 2316 63828214 ~ 63828436 (+) True G70527
TU78056 lncRNA downstream 5764 63831662 ~ 63831917 (+) True G70530
TU78140 lncRNA downstream 150153 63976051 ~ 64024626 (+) True G70613
TU78143 lncRNA downstream 154473 63980371 ~ 63998531 (+) True LOC118965254
XR_002474022.2 mRNA upstream 204199 63620237 ~ 63621429 (+) True LOC110526795
XM_021607970.2 mRNA upstream 226822 63565503 ~ 63598806 (+) False LOC110526778
XM_021607977.2 mRNA upstream 226822 63565503 ~ 63598806 (+) True LOC110526778
XM_021607961.2 mRNA upstream 326178 63333689 ~ 63499450 (+) True LOC110526770
XM_036982605.1 mRNA upstream 354490 63333689 ~ 63471138 (+) False LOC110526770
XR_005052510.1 mRNA downstream 155235 63981133 ~ 63998301 (+) False LOC118965254
XM_021608067.2 mRNA downstream 642625 64468523 ~ 64471084 (+) False LOC110526877
XM_021608072.2 mRNA downstream 642626 64468524 ~ 64471084 (+) True LOC110526877
XM_021608102.2 mRNA downstream 948017 64773915 ~ 64783202 (+) False LOC110526912
XM_021608095.2 mRNA downstream 948237 64774135 ~ 64783737 (+) True LOC110526912
TU77508 other upstream 550332 63274963 ~ 63275296 (+) True G70011
TU75188 other upstream 2092240 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 2510376 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 3883564 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 4500499 59324636 ~ 59325129 (+) True G65442
TU79281 other downstream 983691 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 2089837 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 2089837 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 2461781 66287679 ~ 66288469 (+) True G73515
TU81346 other downstream 2594597 66420495 ~ 66424081 (+) True LOC118965274

Expression Profile