RNA id: TU78051



Basic Information


Item Value
RNA id TU78051
length 208
lncRNA type antisense_over
GC content 0.62
exon number 1
gene id G70525
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 63826837 ~ 63827044 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTGAGCTCATGCAGTATGCGAGTCACCTCGCTGGCATATGGGCACTGGGTATAGTCATCCTCTGCCCACCGGCCTGCCCGGTCACAGCGTCGCCAGGCCTTCTTCTCCATCTGAGTGAGGTGGTGTGAAGCGGCACCAGAAGGGCGGGGGGCATAGCCAAATGTGGATGGAGCACAGGGCAGGAAGGCCAGTATCCCTGCCAGGGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU78050 lncRNA upstream 939 63825628 ~ 63825898 (+) True G70524
TU78048 lncRNA upstream 5484 63821120 ~ 63821353 (+) True G70522
TU77992 lncRNA upstream 88041 63738586 ~ 63738796 (+) True G70467
TU77990 lncRNA upstream 92649 63733965 ~ 63734188 (+) True G70465
TU77986 lncRNA upstream 93406 63728899 ~ 63733431 (+) True G70462
TU78053 lncRNA downstream 1170 63828214 ~ 63828436 (+) True G70527
TU78056 lncRNA downstream 4618 63831662 ~ 63831917 (+) True G70530
TU78140 lncRNA downstream 149007 63976051 ~ 64024626 (+) True G70613
TU78143 lncRNA downstream 153327 63980371 ~ 63998531 (+) True LOC118965254
TU78456 lncRNA downstream 200839 64027883 ~ 64028190 (+) True G70922
XR_002474022.2 mRNA upstream 205408 63620237 ~ 63621429 (+) True LOC110526795
XM_021607970.2 mRNA upstream 228031 63565503 ~ 63598806 (+) False LOC110526778
XM_021607977.2 mRNA upstream 228031 63565503 ~ 63598806 (+) True LOC110526778
XM_021607961.2 mRNA upstream 327387 63333689 ~ 63499450 (+) True LOC110526770
XM_036982605.1 mRNA upstream 355699 63333689 ~ 63471138 (+) False LOC110526770
XR_005052510.1 mRNA downstream 154089 63981133 ~ 63998301 (+) False LOC118965254
XM_021608067.2 mRNA downstream 641479 64468523 ~ 64471084 (+) False LOC110526877
XM_021608072.2 mRNA downstream 641480 64468524 ~ 64471084 (+) True LOC110526877
XM_021608102.2 mRNA downstream 946871 64773915 ~ 64783202 (+) False LOC110526912
XM_021608095.2 mRNA downstream 947091 64774135 ~ 64783737 (+) True LOC110526912
TU77508 other upstream 551541 63274963 ~ 63275296 (+) True G70011
TU75188 other upstream 2093449 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 2511585 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 3884773 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 4501708 59324636 ~ 59325129 (+) True G65442
TU79281 other downstream 982545 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 2088691 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 2088691 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 2460635 66287679 ~ 66288469 (+) True G73515
TU81346 other downstream 2593451 66420495 ~ 66424081 (+) True LOC118965274

Expression Profile