RNA id: TU79014



Basic Information


Item Value
RNA id TU79014
length 213
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G71456
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 64447482 ~ 64447694 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACCTTGCTGAACACAAGTACTCAGACTGCGAAAAAGCGCTGCTGTCGACAGTCTGGGCGGTCAAACATATCACCAGTTATGTCGGCAGACAAAAGGTGATCACAGAAACATGTCACCAGCCTGTGACTTTTCTGAAAAGCCAATGAATTCATGAGGGTGCTGTACACAACAGCAGGATAGCGGCTTGGCTTATGACGCTGCAAAGCCATGATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU79007 lncRNA upstream 5012 64441931 ~ 64442470 (+) True G71449
TU79002 lncRNA upstream 8585 64438658 ~ 64438897 (+) True G71444
TU78972 lncRNA upstream 31186 64416062 ~ 64416296 (+) True G71415
TU78888 lncRNA upstream 32670 64411763 ~ 64414812 (+) True G71333
TU78775 lncRNA upstream 187819 64259307 ~ 64259663 (+) True G71224
TU79022 lncRNA downstream 7969 64455663 ~ 64456133 (+) True G71464
TU79026 lncRNA downstream 10838 64458532 ~ 64458910 (+) True G71468
TU79030 lncRNA downstream 12471 64460165 ~ 64460369 (+) True G71472
TU79372 lncRNA downstream 458305 64905999 ~ 64932480 (+) True G71779
TU79234 lncRNA downstream 495640 64943334 ~ 64985289 (+) True G71653
XR_005052510.1 mRNA upstream 449181 63981133 ~ 63998301 (+) False LOC118965254
XR_002474022.2 mRNA upstream 826053 63620237 ~ 63621429 (+) True LOC110526795
XM_021607970.2 mRNA upstream 848676 63565503 ~ 63598806 (+) False LOC110526778
XM_021607977.2 mRNA upstream 848676 63565503 ~ 63598806 (+) True LOC110526778
XM_021607961.2 mRNA upstream 948032 63333689 ~ 63499450 (+) True LOC110526770
XM_021608067.2 mRNA downstream 20829 64468523 ~ 64471084 (+) False LOC110526877
XM_021608072.2 mRNA downstream 20830 64468524 ~ 64471084 (+) True LOC110526877
XM_021608102.2 mRNA downstream 326221 64773915 ~ 64783202 (+) False LOC110526912
XM_021608095.2 mRNA downstream 326441 64774135 ~ 64783737 (+) True LOC110526912
XM_021608144.2 mRNA downstream 361561 64809255 ~ 64946164 (+) False LOC110526969
TU77508 other upstream 1172186 63274963 ~ 63275296 (+) True G70011
TU75188 other upstream 2714094 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 3132230 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 4505418 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 5122353 59324636 ~ 59325129 (+) True G65442
TU79281 other downstream 361895 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 1468041 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 1468041 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 1839985 66287679 ~ 66288469 (+) True G73515
TU81346 other downstream 1972801 66420495 ~ 66424081 (+) True LOC118965274

Expression Profile