RNA id: TCONS_00026662



Basic Information


Item Value
RNA id TCONS_00026662
length 1222
RNA type processed_transcript
GC content 0.43
exon number 11
gene id XLOC_013541
representative True

Chromosome Information


Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 36455307 ~ 36465466 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


acacactctgGCTACTGCACATGCGCAGATCTCATAAATGAATCCGACTTTAATCAACTTAATTAAGATCTATCATCAAATTATTCGAATTTTTGGAGGCCGGGGTGGCGTGCATGAGCCGCGGTCAGACAGTCACCAATCACCGGGCGGCTAAATGGATCGACGGAggataaaaccattaaaagatgCGGAGAAACACATCACCAGCTCCACTGACAAGACCCATTCACTGGAAACCGAATATATAGAAGGTTACTAAGTTTTGCAGCATTGATGCCGATCATAAGGACGAGACCCTCGGCCGGCTGGTGAATGATGACCATCTGCACCCTAACTGCACTGTCAATAAGATCGTTGTTCAGAGAAAACCTCATTTGTGCCTTTTTGCAATCAGGGATATTTTCTTTGGAGAGGAAATAACGTTTGACTATGGCGCATGTGATCGGCCTTGGAGAAAGcTTTCATTGAAGGATGCCCATATGACTGCAGAAGAAAACTGCTCCgacaactctctgatgagcttTCATTGAAGTATGATCATAGGATGAgaagaagagaactgctctgctccagtaggagacccacaaccctctgatgagcttatattgaaggatgaccatatgacagaggaagagaactgctctgctccagtacgtgacccacaactctctgatgaggttTGCTGAAGTATGACCGTATGACAGAAGGAGAGAacagctctgctccagtacgagacccacaactctgatgagcttatattgaaggatgaccatatgacagaggaagagaactgctctgctccagtacgagactcacaactctctgatgagagaaagTTACAGTGGATCGTGATTTTGGAGGAGGTGAAGTCCAATCTAaaagAGTCCCCTCAAGTATCATCACCATGGTACAGTGTCTGTGAAGATAGTGAAGCAGACCCAGCATTCACAAAAAAGAGAGGTCCCATAAAGAGAAGATCCTggagcaaacaggaagtacatGCTGTGGTGAAACCTGAACCATTGGCTCTAAAAACCAGAGATTGGTCAGCTttggatttttatattaaaaactgaatctcgGCTCTTTAgataaaaaatctgaataacaCTTTTATAGTAAGTATACACTATACATCATTAGTTTAGcactaactctacattaatagactttaggaagcagtttataaatacagcttcaaacgctgtattcttgacttgac

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000139851

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00026983 lncRNA downstream 889911 35561269 ~ 35565396 (-) False XLOC_013535
TCONS_00026984 lncRNA downstream 890022 35562009 ~ 35565285 (-) True XLOC_013535
TCONS_00026982 lncRNA downstream 907249 35544276 ~ 35548058 (-) False XLOC_013535
TCONS_00027372 lncRNA downstream 1201285 35251298 ~ 35254022 (-) True XLOC_013531
TCONS_00026981 lncRNA downstream 1567235 34886240 ~ 34888072 (-) True XLOC_013530
TCONS_00027373 lncRNA upstream 249173 36714639 ~ 36733902 (-) True XLOC_013542
TCONS_00027374 lncRNA upstream 383683 36849149 ~ 36887252 (-) False XLOC_013543
TCONS_00027375 lncRNA upstream 403485 36868951 ~ 36874790 (-) False XLOC_013543
TCONS_00027376 lncRNA upstream 403485 36868951 ~ 36874818 (-) False XLOC_013543
TCONS_00026663 lncRNA upstream 403485 36868951 ~ 36886706 (-) False XLOC_013543
TCONS_00026661 mRNA downstream 319508 36105930 ~ 36135799 (-) True XLOC_013540
TCONS_00026659 mRNA downstream 389220 36060295 ~ 36066087 (-) False XLOC_013539
TCONS_00026660 mRNA downstream 389220 36063005 ~ 36066087 (-) True XLOC_013539
TCONS_00026658 mRNA downstream 612753 35838752 ~ 35842554 (-) True XLOC_013538
TCONS_00026657 mRNA downstream 617634 35807588 ~ 35837673 (-) True XLOC_013537
TCONS_00026665 mRNA upstream 437990 36903456 ~ 36909773 (-) True XLOC_013544
TCONS_00026666 mRNA upstream 483413 36948879 ~ 37007061 (-) False XLOC_013545
TCONS_00026667 mRNA upstream 483413 36948879 ~ 37007294 (-) True XLOC_013545
TCONS_00026668 mRNA upstream 772248 37237714 ~ 37241115 (-) False XLOC_013546
TCONS_00026669 mRNA upstream 772383 37237849 ~ 37241080 (-) True XLOC_013546
TCONS_00026656 other downstream 882012 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026632 other downstream 3361566 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026625 other downstream 3928203 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026611 other downstream 5599772 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026599 other downstream 6536202 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026673 other upstream 944357 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026691 other upstream 2720708 39186174 ~ 39188401 (-) True XLOC_013560
TCONS_00026695 other upstream 3121080 39586546 ~ 39586665 (-) True XLOC_013565
TCONS_00026696 other upstream 3150309 39615775 ~ 39615905 (-) True XLOC_013566
TCONS_00026709 other upstream 4237322 40702788 ~ 40708524 (-) True XLOC_013577

Expression Profile


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