RNA id: TU80528


Basic Information

Item Value
RNA id TU80528
length 1671
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G72858
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 65686749 ~ 65735864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagaccacatgaccttctcccattcctcctctggatcatccagatggtcaatggcaaacttcagacgggcctggacatgcgctggcttgagcagggagaccttgcgtgcgctgcaggattttaatccatgacggcgtagtgtgttactaatggtttacTTTGAGAccgtggtcccagctctcttcaggtcattgaccaggtcctgccgtgtcgttctgggctgatccctcaccttgaTAGTTGATAACCCCACGAGGTGATCATGATCATTGAtaaccccacgaggtgagatcttgcatggagccccagaccgagggtgattgaccgtcatcttgaatttcttccattttctaataattgcgccaacagttgttgccttctcaccaagctgcttgcctactgtcctgtagcccatcccagccttgtgcaggtctacaattttatccctgatgaccttagacagctctctggtcttggccattgtggagaggttggagtctgtttgattgagtgcgtggacaggtgtcttttatacaggtaacaagttcaaacaggtgcagttaatacaggtaatgagtggaaaaCAGGAGGGCtaaaaggtctgtgagagccggaattcttcctggttggtaggtgatcaaatacttatgtcatgcaataaaatgcaaattaattccttaaaaatcatacaatgtgattgtctggatttttgttttagattccgtctctcacagttgaagtgtacctttgataaaaattacagacctctacatgctttgtattttggaaaacctgcaaaatcggtagtgtatcaaatagtttttctccccactgtagatacttttgtacctgtttcctccaacatcttcacaaggtcctttgctgttgttcttggattgatttgcacttttctcaccaaactacgttcatctctaggagacagaacgcgtctccttcctgggcagtatggcggctgtgtggtcccatggtgtttatacttgcatactattgtttgtacagatgaacgtggtaccttcaggcgtctgtaaatttgctcccaaggatgaaccagacttgtggaggtctacaaaaaaaaattggcttggctgatttcttttaattttcccatgatgtcaagaaaagaggaactgagtttgaaggtaggctttgaaatacatccacaggtacacctccaattgactgaaactatgtcaattagcctatcagaagcttctaaagccatgacataatgttctggaattttccaagctgtttaaaggcacagtcaacttagtgtatgttaacttctgacccactggaattgtgatacagtgaattataagtgaaatcatttgtctgtaaacaattgttgggaaaatgacttgtgtcatgcacaaagtagatgtcctaaccgacttgccaaaacgacagtttgttaacaagaaatttgtggagtggttgattttttttttttttaatgactccaacctaagttatgtaaacttccgacttcaattgtaaaGGATTATGATAAAtactgctttgatgtcatacaagcaaaccaCACACCTGTGAGTCCAGAAGTGTACATTTCCATGTACAAAAACATACCATTTACATTGTTAAAGTTTACCTGGTGTCATTCTCTGGTTTGTTCTGAGCAGAATAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80537 lncRNA upstream 24447 65657325 ~ 65662302 (+) True G72866
TU80481 lncRNA upstream 123294 65563113 ~ 65563455 (+) True G72812
TU79642 lncRNA upstream 242076 65406430 ~ 65444673 (+) True G72047
TU79592 lncRNA upstream 358237 65327593 ~ 65328512 (+) True G71997
TU79529 lncRNA upstream 430274 65194818 ~ 65256475 (+) True G71935
TU80629 lncRNA downstream 59553 65795417 ~ 65799491 (+) False LOC110527123
TU80631 lncRNA downstream 59553 65795417 ~ 65799491 (+) False LOC110527123
TU80632 lncRNA downstream 59553 65795417 ~ 65799491 (+) False LOC110527123
TU80628 lncRNA downstream 60752 65796616 ~ 65799491 (+) False LOC110527123
TU80630 lncRNA downstream 60752 65796616 ~ 65799491 (+) False LOC110527123
XM_021608259.2 mRNA upstream 204524 65478933 ~ 65482225 (+) True LOC110527092
XM_036982928.1 mRNA upstream 210234 65372299 ~ 65476515 (+) True thada
XM_021608241.2 mRNA upstream 390645 65291708 ~ 65296104 (+) True LOC110527082
XM_021608225.2 mRNA upstream 465062 65184559 ~ 65221687 (+) True LOC110527046
XM_021608212.2 mRNA upstream 465064 65173289 ~ 65221685 (+) False LOC110527046
XR_005052545.1 mRNA downstream 59123 65794987 ~ 65799402 (+) False LOC110527123
XR_005052546.1 mRNA downstream 59136 65795000 ~ 65799402 (+) False LOC110527123
XM_021608290.2 mRNA downstream 90483 65826347 ~ 65828743 (+) True hcar1-3
XM_021608300.2 mRNA downstream 162563 65898427 ~ 65911535 (+) True LOC110527154
XM_021608309.2 mRNA downstream 179717 65915581 ~ 65922285 (+) False LOC110527164
TU79281 other upstream 785125 64809589 ~ 64901624 (+) True LOC110526969
TU77508 other upstream 2411453 63274963 ~ 63275296 (+) True G70011
TU75188 other upstream 3953361 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 4371497 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 5744685 59941486 ~ 59942064 (+) True G66188
TU80728 other downstream 179871 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 179871 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 551815 66287679 ~ 66288469 (+) True G73515
TU81346 other downstream 684631 66420495 ~ 66424081 (+) True LOC118965274
TU81852 other downstream 1020343 66756207 ~ 66758984 (+) True G74067

Expression Profile