RNA id: TCONS_00027377


Basic Information

Item Value
RNA id TCONS_00027377
length 2307
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id XLOC_013543
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 36849149 ~ 36887469 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCATCTCTCAGAGCTCAAATCCATATAGTCCAAATAGTTTCATTGGTGGGAAAGCTATGAAATGACAAATATGGCTGTTTCGTTTTGGAATTAGTACAAAAAGGTACGCTGCGAGATTGGTTACTTTTAGCCTCCGCCTTTGCGCTTTGCTTCTACCGGAACAAACTTTTCCCTACTTCCGGTCTCGATCGGCATTTTATGAAATAGGCCTATGCTGCTGTGTATTGATGAGGGGGTCGACTGTGCAGTACAGCCAGAAGACAACATGTTTGTGTTAAATTGTCTTCTGCAGGACTGAATAAAGTGGAGGAAAGCAGCTCTTGGTGTCGTCTCGGTGTCATTGAGTGAAAGTAGATCCGTTACATTTATCTGAAAAAACaaAGCCCTGCATGTCATTATGGAAGGCAGTCGTTGGTGACAGACACATCATGTCCCGCTGAGAGAGAGACTGGAGTTTCCACTGTTCAAAGTCTGTGGGGGATTCAAACAACATTAAATCTCTGGATGTTTGACTGCTGCTCCTCGTTATTATGAAAAGAGCAAGCTAGACAGAGTGATCCAGCACAAGGGGACATATGGACTACATCTGAAAGAAGCAAAGGTGAAGACCGAGATGCCACACGCAGGACACGTCGGTATTGTCAGCATTGCTCTGTTATAGACAAGATAACCATTCACGGAAATCAATAAGAACATATCAACGGTAGGTTGGAGAACTGCCATAGAACAGAGTACAGACAAGAAACAGAGCTGTAAAGGAGGAAAGTGTCAGAACAGCCGACTCTCATGGAAATCTAAAACTATTTTAGATTTTGGTCaactgaatttgtatgaatttcttACATCGTCAGTTGTATGATCTGCTTTTGACCCATGGATGATGAGTTCAAGCCCATAGTATATTTAGTTTAGGCTTATGCTAGTATACAATCACACAGAATCTATTTCATTTCATAGCGTGTGCATTAAAAGAAATGGCCTTTTATTTCTTTCCAGGCACCGTGAGTGTTTGCATTTGAACTCATTGAAACTATAGTTGTGTGTAAGCATTTGTTACTGTGCATTTATCACAAAGCATTCATCAGGATTGGCTTCTATTGTTTTCACTATTTCAAGTAATTTTAGTGCGTTCCAAATGGGATATATTGCCCTTCAAAGGGGACTTTGGATTGAAAACATTCATGGCCGCCATATTGAAGTGTCATTTCAAAATCAAATACTCAAAACTGGCCCCTTTCGGAATCAAAGATTTGGAAACTACAGGATTCTGTAGGCCTTTGCGCATGGAAGTTGTTTGGTGCTGCACAATGCTAATCCCTGGGAAATTGTCATATCAGAGGATAAAACCCTGGAAGGGattagggcacaggtgtcaaactcagttcctggagggccgcagctctgcacagtttagttccaaccctaattaaactaaCATAATCAAACTAATGAaatcctttaggcttgtttgatacctacagataGGTGTGTTTTGAAGCAGGTCTGATACCTacagataggtgtgttgaagcagggctggaactaaactttgcagagctgcggctctccaggaatagaGTTTGACATCTctggattagggcatagggatgagccgATACCAAATGGAACGCAGTGCGTTTTGTTGTTCTTCCATCTTTGCTCCTTTTCCAACTGTCAATAAAAAACCCATAAAAGTGTTGTCACCTTGTGGACAAACCAATTAATGGAAAAACTAGCATGTGCATGCTTTTGTGCATGACAACATTTGCTTAAAATCTAAAGCATACTGTGGGGTTACATGACCTTCATgctaactttataaaaaaaaaatcaccacatTGTATGGATCacattgtatgaattcatacggaATTGCCAGCTTGTAAAATAGTTATATGATTTCGCATGAGATAGACTGGCACTCTAATACTTTAAGAGATCATGGAATGTCTCTTGTCAGTCTGTTCATGACAGGAGTTAATTTGAGCATTAAAAGGTGCACTCAGTATGTTTTGGTTTGCTTTTCATTAGTTATTCTGTACTAGTGTATACTGACACCTACAGGTGTGGATGTATAAAGTTTGTTTATTGACAGCTGATCACttatttttcatgtaatttatttcgTGCCTTAAGAACCACCAACAGTACTATATAATAATTAACTTattatgtttattgttatttttacataAGATAAtccttttattaatattattagacaactgatgtgactggagttcTGATTTTATGTGagtgttttatttaatctataaTCACTGTATGTATAAAACATCTGAATACAC

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0009799 specification of symmetry biological_process
GO:0001706 endoderm formation biological_process
GO:0051674 localization of cell biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072359 circulatory system development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0001743 optic placode formation biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003146 heart jogging biological_process
GO:0016477 cell migration biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0009880 embryonic pattern specification biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0046619 optic placode formation involved in camera-type eye formation biological_process
GO:0048568 embryonic organ development biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0033504 floor plate development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048870 cell motility biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:2000826 regulation of heart morphogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:1901166 neural crest cell migration involved in autonomic nervous system development biological_process
GO:1903045 neural crest cell migration involved in sympathetic nervous system development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0071772 response to BMP biological_process
GO:0071773 cellular response to BMP stimulus biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027373 lncRNA downstream 135049 36714639 ~ 36733902 (-) True XLOC_013542
TCONS_00026983 lncRNA downstream 1303555 35561269 ~ 35565396 (-) False XLOC_013535
TCONS_00026984 lncRNA downstream 1303666 35562009 ~ 35565285 (-) True XLOC_013535
TCONS_00026982 lncRNA downstream 1320893 35544276 ~ 35548058 (-) False XLOC_013535
TCONS_00027372 lncRNA downstream 1614929 35251298 ~ 35254022 (-) True XLOC_013531
TCONS_00027379 lncRNA upstream 14552 36902021 ~ 36918987 (-) False XLOC_013544
TCONS_00027380 lncRNA upstream 523248 37410717 ~ 37415445 (-) True XLOC_013550
TCONS_00027381 lncRNA upstream 654246 37541715 ~ 37548709 (-) False XLOC_013551
TCONS_00027382 lncRNA upstream 654246 37541715 ~ 37551134 (-) True XLOC_013551
TCONS_00026679 lncRNA upstream 1350607 38238076 ~ 38244027 (-) True XLOC_013553
TCONS_00026661 mRNA downstream 733152 36105930 ~ 36135799 (-) True XLOC_013540
TCONS_00026659 mRNA downstream 802864 36060295 ~ 36066087 (-) False XLOC_013539
TCONS_00026660 mRNA downstream 802864 36063005 ~ 36066087 (-) True XLOC_013539
TCONS_00026658 mRNA downstream 1026397 35838752 ~ 35842554 (-) True XLOC_013538
TCONS_00026657 mRNA downstream 1031278 35807588 ~ 35837673 (-) True XLOC_013537
TCONS_00026665 mRNA upstream 15987 36903456 ~ 36909773 (-) True XLOC_013544
TCONS_00026666 mRNA upstream 61410 36948879 ~ 37007061 (-) False XLOC_013545
TCONS_00026667 mRNA upstream 61410 36948879 ~ 37007294 (-) True XLOC_013545
TCONS_00026668 mRNA upstream 350245 37237714 ~ 37241115 (-) False XLOC_013546
TCONS_00026669 mRNA upstream 350380 37237849 ~ 37241080 (-) True XLOC_013546
TCONS_00026662 other downstream 403485 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026656 other downstream 1295656 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026632 other downstream 3775210 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026625 other downstream 4341847 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026611 other downstream 6013416 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026673 other upstream 522354 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026691 other upstream 2298705 39186174 ~ 39188401 (-) True XLOC_013560
TCONS_00026695 other upstream 2699077 39586546 ~ 39586665 (-) True XLOC_013565
TCONS_00026696 other upstream 2728306 39615775 ~ 39615905 (-) True XLOC_013566
TCONS_00026709 other upstream 3815319 40702788 ~ 40708524 (-) True XLOC_013577

Expression Profile

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