RNA id: TU81369



Basic Information


Item Value
RNA id TU81369
length 392
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G73610
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66568645 ~ 66569036 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aggtaaagggcctcattgctAAAATCCCTTTAATACCCTGGATGACAGACCAACGggatagctgtagatagatcaactctccagtaggacaTGCTGCCCAGGCTATTGTTTTTTTATTCTAGTAGATATTACCTTGACGATCTGATGTTGTGTCAAAGGtgcaaattcaacatattttatctttggttaccatgatgacataaacCTGTGGTTGAGAATTCagcctcaaaacaacagtttatgactttttgcaaatccaatgtcTTTTTCCACATAGATTTCACATCACAAATGACTTTGAAACTGTTTATTTCACCAGTTTGTACCCAGTGGGAATTGACCATTTGCAGAGAGACACTCTGCTAAGTAGGCTACACATGCATGACTCTGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81370 lncRNA upstream 4215 66563799 ~ 66564430 (+) True G73611
TU81399 lncRNA upstream 74966 66493139 ~ 66493679 (+) True G73640
TU81267 lncRNA upstream 111075 66361209 ~ 66457570 (+) True G73528
TU81306 lncRNA upstream 197027 66370244 ~ 66371618 (+) True G73552
TU81284 lncRNA upstream 227875 66336748 ~ 66340770 (+) True G73536
TU81429 lncRNA downstream 3036 66572072 ~ 66572483 (+) True G73668
TU81430 lncRNA downstream 3717 66572753 ~ 66572964 (+) True G73669
TU81431 lncRNA downstream 4095 66573131 ~ 66573376 (+) True G73670
TU81435 lncRNA downstream 8806 66577842 ~ 66578048 (+) True G73674
TU81436 lncRNA downstream 10484 66579520 ~ 66580238 (+) True G73675
XM_021608422.2 mRNA upstream 717 66550263 ~ 66567928 (+) False LOC110527255
XM_021608430.2 mRNA upstream 717 66550263 ~ 66567928 (+) False LOC110527255
XM_021608439.2 mRNA upstream 717 66550265 ~ 66567928 (+) False LOC110527255
XM_021608449.2 mRNA upstream 717 66550265 ~ 66567928 (+) True LOC110527255
XR_005052559.1 mRNA upstream 145758 66417495 ~ 66422887 (+) False LOC118965274
XM_036983106.1 mRNA downstream 69889 66638925 ~ 66734652 (+) False LOC110527278
XM_021608459.2 mRNA downstream 69891 66638927 ~ 66734652 (+) False LOC110527278
XR_005052560.1 mRNA downstream 69891 66638927 ~ 66734652 (+) False LOC110527278
XM_021608546.2 mRNA downstream 205832 66774868 ~ 66783655 (+) True yipf3
XM_021608559.2 mRNA downstream 224384 66793420 ~ 66802542 (+) True lrrc73
TU81346 other upstream 144564 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 280176 66287679 ~ 66288469 (+) True G73515
TU80728 other upstream 646360 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other upstream 646360 65915735 ~ 65922285 (+) True LOC110527164
TU79281 other upstream 1667021 64809589 ~ 64901624 (+) True LOC110526969
TU81852 other downstream 187171 66756207 ~ 66758984 (+) True G74067
TU81938 other downstream 215299 66784335 ~ 66784969 (+) True G74139
TU83729 other downstream 1805469 68374505 ~ 68374929 (+) True G75747
TU86384 other downstream 4002629 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 4467434 71036470 ~ 71076102 (+) True ccdc85a

Expression Profile