RNA id: TCONS_00027379


Basic Information

Item Value
RNA id TCONS_00027379
length 2959
lncRNA type read_through
GC content 0.39
exon number 3
gene id XLOC_013544
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 36902021 ~ 36918987 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTGTTCCTCTACCTCTTCTTTTTTAACTGCTGCACAGGATTTGGGGTCTTTGGATTGAACCACCGGTGCTCTTCAACCTGATGTAACTTTAGCCGGTTAACTGGATTACGTTTGAAACACTGGGAAATCAGGTTGAAGAGCATCGGTGGTTCAATCCAAAGACCCCAAATCCTGTGCAGCAGTTAAAAAAGAAGAGaaaaaaaaagaaaaaacgaaaTAAGAAGAAAGCACCATTAAAGTCACAAAACTAGCATTATCAGTTATTAATtactccctcatgtcattccaaacccctaaGACCTTACTTTTCTTCAGTGTCAGTTCATGATGTGTGTTGATGAGAGCTCTGTCCTGCACTGTATGCgtgtcgcactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttTTCCGTCAGCAGTGAGACACACATCCAGTGCAGTACAGGACTTCTGAAGTCATTCTTTTTGTTTGAtaagttttgtgtttttctttctgcatTAAAGAAGTTTCTCTTCACAATGACAGCTGTAGCTCCAAACCCCTGACACCTTTCCtcatcttcagaaaacaaatgaaaatatttgagatgaaatcaaatcatcaaaccatgagagctctgtcctgcactgtgtgtgtgtccactgctgacgtttacgtcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttaaacgtcagcagtgcgacacacatacagtgcactgGGCTCATCTGAACGTGCGGtttgagggtcagagagctctcagatttcatctcaaatgttttaatttgtgttctcAATATGAACTAAACATGAACATGAATTAAGGACATgaggtgagtaattaatgacaataatggtAATTAATGGTGCCtagaccgcagctctgcacaagacctttggccacaggagaaatggtcgtacccaaccgagcctggtttctctcgaggttttttccttcacttttgtcaattggtgaagttttgttcctcgccactgtcgccgctggcttgcttggttgggacttgtggagctgcgcatcgatggatttgctcttcagtgtttggacttccagcagtgacaattaaaccacactgaactgaactgaacttcaactgtgaaaactggactgacgcagttttaatttacttctatgttaagctgctttgacacaatccacattgtaaaagcgctatagaaatgaagatgaattgaactgaattaatgATGAGAGTCCATCAGGAAATCCAGTGCTGTCACAGTTTTCTCTTCTAAAGTGTCATCAAAGATCTGCTCAACTATTTTCTCCCTCATAAATGAATCTGGTGTTCTGTCATAAGAGAGACTGATGGTTTTATAATTAAGTGTTCATGATTGTTCTGTAATGAATTGTTCTTTGAATTGTTTTGTGAAGAattgcttttatatatttttaataattcagatGAAATCCTGTGAATCAAACTGAAGCTCTGATCATCATTTCTGAGTTTTCTAAATGACTCCTTACTCAATTAAAGAGAGAGTTCTCCCTAAACTATTtactcaagtgcttccaaaccgATGAGGttatttcctctgttgaacactgaagacgacacaaatctgaaaatctgtaaccattgatgtccacagtaggaaaacaaatacaatggaagtcgatagggtatatgccgaagcatgctaataggactttcaatttgtcagtaacctgggttattTGCTTCCGGTCAGCTGTATGCAAATGAAAAAATCTGCACGTTTAAGGTcaattttctttcaaaatcagcgatcttcactggcTGAGcaatatctgatataaagtgggtctcagattgtacaagaagcactgcattaaattacattttccctgccatgtttttataatatgagcatttatttttccccagtatattcaatggagctgcgctagcctgctgattctgacgggcgcgtgcaagtaaagctttttgtctcgttttacgcttgagaaactaaatgaatgccaaagtatatttaattgaatgtatttaaattacattacaacatccatgctggAAAAGGAACCGTGTaaagtagaaaaataaaataaaatcacaataacaggtcaccggaagttatcagtatgggaaaaacactagctcggcatataccctatagttacaggtttccagcatttttcaaaatatcttcttttgagtataacagaaaaaaaaaacttatagtaagggctgagtaaaagatgacagaatattcattatAGGCTGAAGGAATCTCTTTTAACAACCCAGTAGTGCCATATACTATGTTTACTATGATTTAACACTAATTTGTGGAGCCTGTTTAGCCAAATGGAACCACAGAGAAGGTTTTACTGTTAGACAATATGTTGTTATATACTACAATATCATATACTAATACAACAAATATTTCCCCCCTGGTACAGTGAAGATTGCAGACCACCCTTGCAGACTGTTCAAACTTTGACAATCTCAGTTTAAAGCAACAGTTTAGACTCGAGTAACTGGACTGTGTTGGACAGCTTTCATGTATACGACTGCAAGAGAAGTTCCTGAATACCTGAGGTCTACTGTTTAGATGCCAAGCAGATACACTGCATAGGTCAAACATTGGCAACACAAGCAGCTCTGGGTTCAGGCCTGGAAGAACAGTCTCATGATGATCTCAGTGTGATTTGGGCTGTCGCTTGTAGAAGCAGCTGTTCTGCTCAGTTACTGCCATCACAAGCTGTGTCCAGCAACATCAAGAGAAAATCTACAAAAATAACAGATAAAAGAGAAACATGTTCAATCATTATTGAAAGAAACACAAGACACCAGTCGATGACATTATAGCATCTTTTAGAAGTAACCAACAAtaacttttaaatacatttctg

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0048731 system development biological_process
GO:0001707 mesoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0007507 heart development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0035295 tube development biological_process
GO:0045165 cell fate commitment biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003260 cardioblast migration biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027378 lncRNA downstream 14552 36868951 ~ 36887469 (-) False XLOC_013543
TCONS_00027377 lncRNA downstream 14552 36868951 ~ 36887469 (-) False XLOC_013543
TCONS_00026664 lncRNA downstream 14552 36868951 ~ 36887469 (-) True XLOC_013543
TCONS_00027374 lncRNA downstream 14769 36849149 ~ 36887252 (-) False XLOC_013543
TCONS_00026663 lncRNA downstream 15315 36868951 ~ 36886706 (-) False XLOC_013543
TCONS_00027380 lncRNA upstream 491730 37410717 ~ 37415445 (-) True XLOC_013550
TCONS_00027381 lncRNA upstream 622728 37541715 ~ 37548709 (-) False XLOC_013551
TCONS_00027382 lncRNA upstream 622728 37541715 ~ 37551134 (-) True XLOC_013551
TCONS_00026679 lncRNA upstream 1319089 38238076 ~ 38244027 (-) True XLOC_013553
TCONS_00026682 lncRNA upstream 1337202 38256189 ~ 38258669 (-) False XLOC_013554
TCONS_00026661 mRNA downstream 766222 36105930 ~ 36135799 (-) True XLOC_013540
TCONS_00026659 mRNA downstream 835934 36060295 ~ 36066087 (-) False XLOC_013539
TCONS_00026660 mRNA downstream 835934 36063005 ~ 36066087 (-) True XLOC_013539
TCONS_00026658 mRNA downstream 1059467 35838752 ~ 35842554 (-) True XLOC_013538
TCONS_00026657 mRNA downstream 1064348 35807588 ~ 35837673 (-) True XLOC_013537
TCONS_00026666 mRNA upstream 29892 36948879 ~ 37007061 (-) False XLOC_013545
TCONS_00026667 mRNA upstream 29892 36948879 ~ 37007294 (-) True XLOC_013545
TCONS_00026668 mRNA upstream 318727 37237714 ~ 37241115 (-) False XLOC_013546
TCONS_00026669 mRNA upstream 318862 37237849 ~ 37241080 (-) True XLOC_013546
TCONS_00026670 mRNA upstream 326344 37245331 ~ 37252036 (-) True XLOC_013547
TCONS_00026662 other downstream 436555 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026656 other downstream 1328726 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026632 other downstream 3808280 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026625 other downstream 4374917 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026611 other downstream 6046486 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026673 other upstream 490836 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026691 other upstream 2267187 39186174 ~ 39188401 (-) True XLOC_013560
TCONS_00026695 other upstream 2667559 39586546 ~ 39586665 (-) True XLOC_013565
TCONS_00026696 other upstream 2696788 39615775 ~ 39615905 (-) True XLOC_013566
TCONS_00026709 other upstream 3783801 40702788 ~ 40708524 (-) True XLOC_013577

Expression Profile

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