RNA id: TU81938



Basic Information


Item Value
RNA id TU81938
length 635
RNA type TUCP
GC content 0.43
exon number 1
gene id G74139
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66784335 ~ 66784969 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


attaaatatgagcatttgcccactgaagtcggttacgacgccaaactgccgtcaggtcaagaccctggtgaggacaacaagatgagcttccctgatacGGTTTCTGAcaagtttgtgcagaaattctttgtacaaacccactgtttcatcagctgtccaggtggctggtctcagacgatcccgcaggtgaagaagccggttttggaggtcctgggctggcgtggttacacgtggtctgtggttgtgaggtcagttggacatactgcaaaattctctaaaatgacgttgaagGTGGCTTATGGAAGAGATCTGAACATTaatatctggcaacagctctggtggacatacctgcagtcagcatctaaattgcactctccctcaacttgagacatcgatgacattgtgttgtgtgacaaaactgcatgtTTTAGAGTCGCCATTTATTGGTCACACActaatttagcagatgttattgcgggtataGCTAAattcttgtgttcctagctctaacagtgcagttgTATCTAACAGTTCTCAACAATACAcactaaaagtaaaataatggaattagaAATATGAAATATTAGactgagcaatgtcagagtggcacggactaaaatacagtacaatagaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81929 lncRNA upstream 13203 66770907 ~ 66771132 (+) True G74131
TU81925 lncRNA upstream 13947 66768928 ~ 66770388 (+) True G74128
TU81917 lncRNA upstream 30484 66753518 ~ 66753851 (+) True G74127
TU81916 lncRNA upstream 31148 66752891 ~ 66753187 (+) True G74126
TU81912 lncRNA upstream 47347 66736787 ~ 66736988 (+) True G74122
TU81939 lncRNA downstream 115 66785084 ~ 66785570 (+) True G74140
TU81945 lncRNA downstream 7650 66792619 ~ 66792818 (+) True G74146
TU81980 lncRNA downstream 51535 66836504 ~ 66837614 (+) True G74174
TU81963 lncRNA downstream 66599 66851568 ~ 66852284 (+) True G74157
TU82002 lncRNA downstream 80443 66865412 ~ 66866511 (+) True G74195
XM_021608546.2 mRNA upstream 680 66774868 ~ 66783655 (+) True yipf3
XM_036983106.1 mRNA upstream 49683 66638925 ~ 66734652 (+) False LOC110527278
XM_021608459.2 mRNA upstream 49683 66638927 ~ 66734652 (+) False LOC110527278
XR_005052560.1 mRNA upstream 49683 66638927 ~ 66734652 (+) False LOC110527278
XM_021608439.2 mRNA upstream 216407 66550265 ~ 66567928 (+) False LOC110527255
XM_021608559.2 mRNA downstream 8451 66793420 ~ 66802542 (+) True lrrc73
XM_036983187.1 mRNA downstream 100468 66885437 ~ 66954091 (+) False dlk2
XM_036983196.1 mRNA downstream 100468 66885437 ~ 66954091 (+) False dlk2
XM_036983202.1 mRNA downstream 100468 66885437 ~ 66954091 (+) False dlk2
XM_036983191.1 mRNA downstream 100639 66885608 ~ 66954091 (+) False dlk2
TU81852 other upstream 25351 66756207 ~ 66758984 (+) True G74067
TU81346 other upstream 360254 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 495866 66287679 ~ 66288469 (+) True G73515
TU80728 other upstream 862050 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other upstream 862050 65915735 ~ 65922285 (+) True LOC110527164
TU83729 other downstream 1589536 68374505 ~ 68374929 (+) True G75747
TU86384 other downstream 3786696 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 4251501 71036470 ~ 71076102 (+) True ccdc85a
TU90667 other downstream 6766647 73551616 ~ 73571737 (+) False G82111
TU90669 other downstream 6786097 73571066 ~ 73571737 (+) True G82111

Expression Profile