RNA id: TU82571



Basic Information


Item Value
RNA id TU82571
length 459
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G74693
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67237109 ~ 67237567 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggaacgcacaatccctccatcagtgctcagactgtccgcaataggctgagagaggctggactgagggcttgtaggcctgttgtaaggcaggtcctccccagacatcaccggcaacaacgtcgcctatgggcacaaacccaccgtcgctggaccagacaggactgtcaaaaagtgctcttcactgacgagtcgcagttttgtctcaccaggggtgatggttgaattagagtttatcgtcgaaggaatgagcgctacaccgaggcctgtactctggagcaggatcgatttggaggtggagggtccgtcatggtgtgtcacagcatcatcggactgagcttgttgtcattgcaggcaatctcaacactgtgcgttacaggaaagacatcctcctccctcatgtggtacccttcctgcaggctcatcctgacatgaccctccagcatgacaatgccaccagcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82570 lncRNA downstream 782 67236116 ~ 67236327 (-) True G74692
TU82566 lncRNA downstream 11418 67225402 ~ 67225691 (-) True G74688
TU82391 lncRNA downstream 140424 67039268 ~ 67096685 (-) True si:dkeyp-121d4.3
TU82289 lncRNA downstream 353422 66843366 ~ 66883687 (-) True tjap1
TU82286 lncRNA downstream 448907 66787911 ~ 66788202 (-) True G74445
TU82577 lncRNA upstream 34167 67271734 ~ 67271956 (-) True G74699
TU82589 lncRNA upstream 55569 67293136 ~ 67293369 (-) True G74711
TU82593 lncRNA upstream 60663 67298230 ~ 67298971 (-) True G74715
TU82618 lncRNA upstream 92168 67329735 ~ 67330005 (-) True G74739
TU83134 lncRNA upstream 99585 67337152 ~ 67337527 (-) True G75208
XM_021608822.2 mRNA downstream 1675 67226729 ~ 67235434 (-) True LOC110527505
XM_021608803.2 mRNA downstream 101320 67070153 ~ 67135789 (-) True LOC110527477
XM_021608765.2 mRNA downstream 101321 67068696 ~ 67135788 (-) False LOC110527477
XM_021608776.2 mRNA downstream 101321 67068696 ~ 67135788 (-) False LOC110527477
XM_021608792.2 mRNA downstream 101322 67068696 ~ 67135787 (-) False LOC110527477
XM_021608834.2 mRNA upstream 14725 67252292 ~ 67271239 (-) True acss1
XM_021608848.2 mRNA upstream 50995 67288562 ~ 67291218 (-) False LOC110527518
XM_021608857.2 mRNA upstream 51679 67289246 ~ 67291218 (-) True LOC110527518
XM_021608968.2 mRNA upstream 149180 67386747 ~ 67387983 (-) False LOC110527584
XM_021608984.2 mRNA upstream 149180 67386747 ~ 67387998 (-) False LOC110527584
TU82368 other downstream 226522 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 414293 66818844 ~ 66822816 (-) False tjap1
TU78947 other downstream 2855753 64369902 ~ 64381356 (-) True LOC110526867
TU77510 other downstream 3959357 63277208 ~ 63277752 (-) True G70013
TU76624 other downstream 4818813 62411522 ~ 62418296 (-) True G69210
TU83185 other upstream 148942 67386509 ~ 67388044 (-) True LOC110527584
TU83338 other upstream 432022 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other upstream 432022 67669589 ~ 67681730 (-) True LOC110527687
TU83574 other upstream 920394 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 972613 68210180 ~ 68211706 (-) True G75682

Expression Profile