RNA id: TU82632


Basic Information

Item Value
RNA id TU82632
length 2386
lncRNA type intronic
GC content 0.38
exon number 1
gene id G74750
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67365709 ~ 67368094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAAAATCGACAATTTCCCCACATAACTAAACAGCCGGAGATCATATGCGCCTCAAACAACTATTATGCAGAGTTATTGAAGAACCCTGTTAATGACCGTATCAATTTGTCTTGATTCATCATGTTAAAGTTATGCTTTGTGTAAGAAGCATTTGATTTTCAATCCATACATTATTTGGGATATGTGTGCACACCATAACATAgggagcatcccaaacatgctcaatgggtgacatgtgattatgcaggccatggaagaactgggacattttcagcttccaggaattgtgtacagatccttgcgacattgggccgtgcattatcatgctgaaacatgaggtggtgAATGAATGGCATGAAAAGGGTCCTTAGGatcttgtcatggtatctctgtgcctTCAAATTGCAATcgctaaaatgcaattgtgttcgttgtccttaGCTGATGCCTGCccaataccataaccccaacccaccatgggacactctgacaacgttgacatcagcaaaccacccGCCCACATGACAACATACATGTCGCctgcggttggacgtactgccaaattctctaaaacaacgttggaggcggcttatggtagagatatgAACATTCAAtactttggcaacagctctggtaaacattcctgcattcagcatgccaattgcacgctccctcaacttgagacatctgtggcattgtgttgtgagacaactgcacattttagtggcctttttattgtccccagcacaaggcgcacctgtgtaatgataattctgtttaatcagcttcttgataatccatctaccttacTGGTGTGGCCTACCTTGgcaatgagaaatgctcactaacagggatgtaatttTTGCACAATATTTGAGTTAtttctaaatgttttatttcagctcatgaaacatgggaccaaactttacatgttgcatttatatttttgttcagtgtttatcTTTAATGTATTCATGTGAAGAAGAAATAAGGTACATTTATTATGAATGACTTTGTAACAGCTCCAAACAGTTGTCCACTACAAGAAATGCACACTGGTACCTGCATTTATAGAAAGACTCCAATATGAAATGCATATGCATAGGCATGGTAGCAATTAAAAGgaaacagtttggagattatgggtAAATTATTAGACCTAAATTGAGGACACAACAATTCACCTGAAACCAGACTAAATCCAAACATCACATTGTTGATTTTATTTGCATtctacatttactgtactttttgaCACTTTTGTTAATGAAATcggaaaatactctggatacattcagtaacaagaatattcctggaaaatgtggggtaCAGATAAaaaaatgacaagggtttgagtgagaggacacacacctctccaaagtgtgcacagctCTTAAGTAATTTAAATGCACTTTTAACTCGAAGGGTCTTCAACTATAGggtgctttttattttattttttttagctcTCCTTGCTCTGCTGTTGAGGAACTaaagcaagcacacttgtagttttatttggaacacaaccctgaattctcgccatcacacaattattgtttacgcaatccaaaaacaTCCCGTTAAaaatcacaatctgggtcaggtgggcaacatttgaaagcttgttcatTTGcgaacatgactagctaagttataaaatactatcttagtgttaggctttcacagggCAATTCAGAGAGATGTATCATCATTTTGGTATGCTTAGAAAGAAGTTCCACTGCAAATTTGTCACAATagacaggctcattctgttcagaacaacccaggttatgacgccatgtcatcttgtacaTGAAACAAACCTTTCTAGGTTTTTCTCTAATCTTGCATGATGAATTGGCATCAAAAGAAAAGAAAGCCTTTTTAAGTGAGCAGAAATTGGTGAACAGTTATCATAGGACTGGATCCTTGAGTAGGATTTGTCCGCACCActaactaggtttccatccaagtGGCAatagattttcatgcgaatatataaaataaaatctgcataaagaaaagatgcccattttcccaccagtggtgtttccaccaaactgacttgttgtggataaaaatCAGTGTGTGACGTAGTGCACTCAATGtgttttcatgtaccgaataaaaatctcaatgtgtttccattgcattttcaactctaccgattTAGTTTTGTTACAAACTGTTgagttaaatagcaaatgtgcctactctggtcttgactCTGGTCTTGACACGTACTCTCactgcagatacagtgcaggttaGTGCTTTTTGAGTTCTGGTTCAATTATAAAAATAATCACGGATTTTGGtttctgtaaaaataaaataaaaataaatactttaaaATGTACttattatgtgggttgaatgat

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82649 lncRNA upstream 16320 67348787 ~ 67349389 (+) True G74767
TU82641 lncRNA upstream 28121 67337223 ~ 67337588 (+) True G74759
TU82564 lncRNA upstream 36809 67323906 ~ 67328900 (+) True G74686
TU82539 lncRNA upstream 78711 67286790 ~ 67286998 (+) True G74662
TU82537 lncRNA upstream 80551 67284482 ~ 67285158 (+) True G74660
TU82654 lncRNA downstream 1604 67369698 ~ 67369924 (+) True G74772
TU82655 lncRNA downstream 2621 67370715 ~ 67370956 (+) True G74773
TU82658 lncRNA downstream 9579 67377673 ~ 67377927 (+) True G74776
TU82660 lncRNA downstream 10482 67378576 ~ 67378924 (+) True G74778
TU82631 lncRNA downstream 17679 67385773 ~ 67387886 (+) True LOC110532586
XM_021564847.2 mRNA upstream 138322 67223308 ~ 67227387 (+) False cytf
NM_001165189.2 mRNA upstream 139681 67223327 ~ 67226028 (+) False cytf
XM_021608814.2 mRNA upstream 170983 67143452 ~ 67194726 (+) True LOC110527498
XM_021608674.2 mRNA upstream 403573 66958838 ~ 66962136 (+) False mea1
XM_021608682.2 mRNA upstream 403573 66958860 ~ 66962136 (+) True mea1
XM_036983300.1 mRNA downstream 19947 67388041 ~ 67413285 (+) False pygb
XM_021608906.2 mRNA downstream 21345 67389439 ~ 67413281 (+) False pygb
XM_036983307.1 mRNA downstream 24655 67392749 ~ 67413285 (+) True pygb
XM_021608956.2 mRNA downstream 75612 67443706 ~ 67446493 (+) True gins1
XM_021567740.2 mRNA downstream 131093 67499187 ~ 67506665 (+) False aifm2
TU81938 other upstream 580740 66784335 ~ 66784969 (+) True G74139
TU81852 other upstream 606725 66756207 ~ 66758984 (+) True G74067
TU81346 other upstream 941628 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 1077240 66287679 ~ 66288469 (+) True G73515
TU80729 other upstream 1443424 65915735 ~ 65922285 (+) True LOC110527164
TU83729 other downstream 1006411 68374505 ~ 68374929 (+) True G75747
TU86384 other downstream 3203571 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 3668376 71036470 ~ 71076102 (+) True ccdc85a
TU90667 other downstream 6183522 73551616 ~ 73571737 (+) False G82111
TU90669 other downstream 6202972 73571066 ~ 73571737 (+) True G82111

Expression Profile