RNA id: TU82658



Basic Information


Item Value
RNA id TU82658
length 255
lncRNA type intronic
GC content 0.50
exon number 1
gene id G74776
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67377673 ~ 67377927 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acgccacgttgcaccacagactgtctaggagttggcggatgctttagtccaggtctgggaggagatccctcaagGGACCATctaccacctcatcaggagcatgcccaggcgttgtagggaggtcatacaggcacatggaggccacacacactactgagcctcattttgacttgttttaaggacattacatcaaagtcgGATCAGCCTgttgtgtggttttccactttaattttgagtgtgactccaaatccagac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82655 lncRNA upstream 6717 67370715 ~ 67370956 (+) True G74773
TU82654 lncRNA upstream 7749 67369698 ~ 67369924 (+) True G74772
TU82632 lncRNA upstream 9579 67365709 ~ 67368094 (+) True G74750
TU82649 lncRNA upstream 28284 67348787 ~ 67349389 (+) True G74767
TU82641 lncRNA upstream 40085 67337223 ~ 67337588 (+) True G74759
TU82660 lncRNA downstream 649 67378576 ~ 67378924 (+) True G74778
TU82631 lncRNA downstream 7846 67385773 ~ 67387886 (+) True LOC110532586
TU82738 lncRNA downstream 134502 67512429 ~ 67512806 (+) True G74852
TU82737 lncRNA downstream 135924 67513851 ~ 67514529 (+) True G74851
TU82700 lncRNA downstream 198731 67576658 ~ 67576949 (+) True G74814
XM_021564847.2 mRNA upstream 150286 67223308 ~ 67227387 (+) False cytf
NM_001165189.2 mRNA upstream 151645 67223327 ~ 67226028 (+) False cytf
XM_021608814.2 mRNA upstream 182947 67143452 ~ 67194726 (+) True LOC110527498
XM_021608674.2 mRNA upstream 415537 66958838 ~ 66962136 (+) False mea1
XM_021608682.2 mRNA upstream 415537 66958860 ~ 66962136 (+) True mea1
XM_036983300.1 mRNA downstream 10114 67388041 ~ 67413285 (+) False pygb
XM_021608906.2 mRNA downstream 11512 67389439 ~ 67413281 (+) False pygb
XM_036983307.1 mRNA downstream 14822 67392749 ~ 67413285 (+) True pygb
XM_021608956.2 mRNA downstream 65779 67443706 ~ 67446493 (+) True gins1
XM_021567740.2 mRNA downstream 121260 67499187 ~ 67506665 (+) False aifm2
TU81938 other upstream 592704 66784335 ~ 66784969 (+) True G74139
TU81852 other upstream 618689 66756207 ~ 66758984 (+) True G74067
TU81346 other upstream 953592 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 1089204 66287679 ~ 66288469 (+) True G73515
TU80729 other upstream 1455388 65915735 ~ 65922285 (+) True LOC110527164
TU83729 other downstream 996578 68374505 ~ 68374929 (+) True G75747
TU86384 other downstream 3193738 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 3658543 71036470 ~ 71076102 (+) True ccdc85a
TU90667 other downstream 6173689 73551616 ~ 73571737 (+) False G82111
TU90669 other downstream 6193139 73571066 ~ 73571737 (+) True G82111

Expression Profile