RNA id: TU83190



Basic Information


Item Value
RNA id TU83190
length 257
lncRNA type intronic
GC content 0.47
exon number 1
gene id G75254
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67385119 ~ 67385375 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cagttggttaactgcgttgttcaggggcagaacagatttttaccttgtcagctcgggatttgatcttgcaacctttcggttactagtacaacgctctaaccactaggatacccgcCAATATAcagggtaccgatacagagtcaatgtgcgggggcaccggttagttgaggtagtatgtacatgtaggtagagtaattaaagtgactatgcatagatgacaacagagtgtagcagtggtgtaaagagggggagagggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83169 lncRNA downstream 10400 67374499 ~ 67374719 (-) True G75237
TU83168 lncRNA downstream 11025 67373883 ~ 67374094 (-) True G75236
TU83166 lncRNA downstream 16718 67368186 ~ 67368401 (-) True G75234
TU83164 lncRNA downstream 17015 67366873 ~ 67368104 (-) True G75233
TU83159 lncRNA downstream 19311 67365602 ~ 67365808 (-) True G75232
TU83182 lncRNA upstream 17166 67402541 ~ 67413256 (-) True G75246
TU83247 lncRNA upstream 129437 67514812 ~ 67515221 (-) True LOC118966711
TU83250 lncRNA upstream 133439 67518814 ~ 67519037 (-) True G75314
TU83251 lncRNA upstream 134538 67519913 ~ 67520212 (-) True G75315
TU83255 lncRNA upstream 139341 67524716 ~ 67524946 (-) True G75319
XM_021608848.2 mRNA downstream 93901 67288562 ~ 67291218 (-) False LOC110527518
XM_021608857.2 mRNA downstream 93901 67289246 ~ 67291218 (-) True LOC110527518
XM_021608834.2 mRNA downstream 113880 67252292 ~ 67271239 (-) True acss1
XM_021608822.2 mRNA downstream 149685 67226729 ~ 67235434 (-) True LOC110527505
XM_021608803.2 mRNA downstream 249330 67070153 ~ 67135789 (-) True LOC110527477
XM_021608968.2 mRNA upstream 1372 67386747 ~ 67387983 (-) False LOC110527584
XM_021608984.2 mRNA upstream 1372 67386747 ~ 67387998 (-) False LOC110527584
XM_021608976.2 mRNA upstream 1372 67386747 ~ 67389299 (-) False LOC110527584
XM_021608934.2 mRNA upstream 30364 67415739 ~ 67443275 (-) False abhd12
XM_021608942.2 mRNA upstream 30479 67415854 ~ 67443770 (-) True abhd12
TU82368 other downstream 374532 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 562303 66818844 ~ 66822816 (-) False tjap1
TU78947 other downstream 3003763 64369902 ~ 64381356 (-) True LOC110526867
TU77510 other downstream 4107367 63277208 ~ 63277752 (-) True G70013
TU76624 other downstream 4966823 62411522 ~ 62418296 (-) True G69210
TU83185 other upstream 1134 67386509 ~ 67388044 (-) True LOC110527584
TU83338 other upstream 284214 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other upstream 284214 67669589 ~ 67681730 (-) True LOC110527687
TU83574 other upstream 772586 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 824805 68210180 ~ 68211706 (-) True G75682

Expression Profile