RNA id: TU83182


Basic Information

Item Value
RNA id TU83182
length 2754
lncRNA type antisense_over
GC content 0.49
exon number 13
gene id G75246
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67402541 ~ 67413256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGTGATTGCGGTGACAAGTGATACAGTACTTATTGAAGGATGAAAAAAGACAACTGCTTAAAAAAAAGGTAGTTACTGAGAAACAGCATATTTTTCTTTGAAGTACATTTAGCGAAGACATTTAAGTGATGCTACTGAAATATAGATTATACTCATACAGTAGCCATCTCATTTCAGAAGTCACGCCAAGGCCATTTGTGGTGACAGCTGCTCCATAATCTCTGAAGTGGGAGTGTTCTAACAGGCCACTGAGCATGGTTTTCCTCATAAGGGACATAGTGAAGCATCAGAACTGTTTCGCCAAGCTGTATACTacacattttcaaatcaaatacaGTAGAATTGTACAAAACGTTCCATTAGACCAATGGCATGTTACAACTTTAAACCAGGCACTTGCTTCTAGATAATTGTTTCTCTCTCTTATGAATGCTATGGTCCAAAATTGGTACATTAATGACCAGGCACTTACTTAACATATAGACAAATATCACAGTACACATTCTATAACTCTGAAATGCAATGCTTTGTCAGTGATGATTAAAACAAAATCCCCATTACAAGTCTTAGTAGCAaacaaaatgtgttatttttgGTTGACTATTCCGAGGCAGTAGTAGACCAATCATATTCAGCAGTGTAAACTGTATGGTCATTACTGATCAACTGGGATTGGCATCTACAGTATACGTGCACATGGTGGAGTCAAAGACAAGCAGGAGTAATAGTAAGCAGAGGCTAGAGTCAAACACGCTTCCTTTGGCTGTTTAAGACGTTGTACATGCGATCTGCCTCCGACTCGAACCCCATCTCTGCAATGTGGTAATGGGTGGGCTATGAGTCAAGCCTGATGAGACAGACCTACAGCGAGGAGAAGTAACACAAGCACTTCTCTCCTAACTGGAGAGTGAAGGCGGGCTCCTCATTTGCGGGATTCAACAGGGGGCTCGTTGGGGGGTGGGATCTTCACATCGGAGGGCTCCACGCCCCAGATATCCCGGGCGTACTCGCTGATGGTTCGGTCGCTGGAGAACTTGCCGGAACCCGCAATGTTTCGAATCACTGTTCTTGTCCACTCTTTAGGGTTCTTGTATAGCTCATTGACTCGATCTTGGCAAGTGATGTAGGCCTCATAGTCAGCAAACACTTTGAACCTGTCGTGGTTCATCAGCATGTTCACCACATCCTTGAAGAGCTCATGCTCTTTGGGACTGAAGTAGCCAGTCTGGATCTGATCTATCACCTGCCTCAGCTCTGATAGACGCTCGTAGTACTCCCTGGCATTGTACCCTGTTTTGTCCATGGCATCCACATCCTCTACCCTCATGCCGAAGATGAAGAGGTTCTCCTCTCCGGCCTCCTCAGCCATCTCTACGTTGGCGCCGTCCATGGTGCCGATGGTGAGCGCTCCGTTCAGCATGAACTTCATGTTGCCAGTGCCAGAGGCCTCTGTTCCCGCTGTGGAGATCTGTTCTGATAAGTCAGCTGCAGGGATCACTTTCTCTGCTAGGGAGACCCTGTAGTTCTCAAGGTAGATGACCTTTAACCTGTCCCCCACCACCGGGTCGTTGTTGATCACCTGGCCCACCGCCGTGATCAGCTTGATGATCATTTTGGCCATGTGGTAGCCAGGTGCAGCCTTTCCTCCAATTATCACAGTCCTGGGAACAAAGTGTTTAGAGGGGTCCTTTTTAATCCGGTTGTAGAAGGTGATGATGTGGAGGACGTTGAGCAGTTGTCTCTTGTACTCATGGATTCTCTTCACATGGATGTCAAAGATGGACTCAGGGTTGATCTTCACCTCATACTCCTTCTCCAGGTAGGCTGCAAACTTCTGCTTGTTCTCCTGTTTTACATTGGCGATGTCACAAATGAAAGCATCTTCATCAATGAAGTCCAGTAGTTTCCTCAGCTGGAAGAGGTCTGTCAAGAAGTCGTCTCCAATTTTCTCAGCGATGAGGTCAGCCAGGCCTGGGTTACACAGCAGCAGCCAGCGGCGAGGAGTGATACCATTGGTCTTGTTCTGGAACTTCTCTGGCTCCACCTCATAGAAGTCCTTGAAAACAGTGTTCTTGACGATTTCAGAGTGGATCCGGGCGACCCCGTTGACAGCGTGGGAGCCCACCACACACAAGTGGGCCATGTTGATCCTCTTGGGGTCTCCCTCCTCGATCAGGGACATCCTCCTCAGACGGTCATGGTCCCCTGGGAACATGGCAGCGATCCTttggaggtggaggtggttgATCTCGTAGATGATCTGCAGGTGGCGAGGCAGCAGCTTCTCAAACAGGTTGATGGGCCAGCGCTCCAGGGCCTCAGGCAGGACGGTGTGGTTGGTGTAGGCACAGGTCTGACGCGTCACCTCCCaagccttgtcccagtccaaCTTCTCCAGATCCACTAGGATCCTCATCAGCTCAGGGATGGCCAAGGCAGGGTGGGTGTCATTCAGCTGGATGGCCACCTTCTCTGGGAAGGTCTCAAAGGAGGTCCTGACAGGGTCTCTGCAGCCAAACTTGGAAGACTTGAAGCGGCGGATGATGTCCTGCAGTGTGGCGGCCACCACAAAGTACTCTTGCTTCAGACGCAGCTCCTTGCCCTCAAAGAACTGAGCACACACACTTTAGAATGATAACAGTCTATTCTCAAAGCAATCACTCAAGGGCAAGTTGACCCCATGTGGTGAATACCTAGCATCAGTTTAGCGTCGGACACAGATTTGCAGacgttatcgcaggtgcagtgaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83190 lncRNA downstream 17166 67385119 ~ 67385375 (-) True G75254
TU83169 lncRNA downstream 27822 67374499 ~ 67374719 (-) True G75237
TU83168 lncRNA downstream 28447 67373883 ~ 67374094 (-) True G75236
TU83166 lncRNA downstream 34140 67368186 ~ 67368401 (-) True G75234
TU83164 lncRNA downstream 34437 67366873 ~ 67368104 (-) True G75233
TU83247 lncRNA upstream 101556 67514812 ~ 67515221 (-) True LOC118966711
TU83250 lncRNA upstream 105558 67518814 ~ 67519037 (-) True G75314
TU83251 lncRNA upstream 106657 67519913 ~ 67520212 (-) True G75315
TU83255 lncRNA upstream 111460 67524716 ~ 67524946 (-) True G75319
TU83258 lncRNA upstream 115283 67528539 ~ 67529102 (-) True G75322
XM_021608976.2 mRNA downstream 13242 67386747 ~ 67389299 (-) False LOC110527584
XM_021608984.2 mRNA downstream 14543 67386747 ~ 67387998 (-) False LOC110527584
XM_021608968.2 mRNA downstream 14558 67386747 ~ 67387983 (-) False LOC110527584
XM_021608848.2 mRNA downstream 111323 67288562 ~ 67291218 (-) False LOC110527518
XM_021608857.2 mRNA downstream 111323 67289246 ~ 67291218 (-) True LOC110527518
XM_021608934.2 mRNA upstream 2483 67415739 ~ 67443275 (-) False abhd12
XM_021608942.2 mRNA upstream 2598 67415854 ~ 67443770 (-) True abhd12
XM_021608870.2 mRNA upstream 33185 67446441 ~ 67491007 (-) False ninl
XM_021608893.2 mRNA upstream 33185 67446441 ~ 67491007 (-) False ninl
XM_036983326.1 mRNA upstream 33185 67446441 ~ 67493348 (-) False ninl
TU83185 other downstream 14497 67386509 ~ 67388044 (-) True LOC110527584
TU82368 other downstream 391954 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 579725 66818844 ~ 66822816 (-) False tjap1
TU78947 other downstream 3021185 64369902 ~ 64381356 (-) True LOC110526867
TU77510 other downstream 4124789 63277208 ~ 63277752 (-) True G70013
TU83338 other upstream 256333 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other upstream 256333 67669589 ~ 67681730 (-) True LOC110527687
TU83574 other upstream 744705 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 796924 68210180 ~ 68211706 (-) True G75682
TU84158 other upstream 1162337 68575593 ~ 68577744 (-) False LOC110527951

Expression Profile