RNA id: TU82738


Basic Information

Item Value
RNA id TU82738
length 378
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G74852
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67512429 ~ 67512806 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggggctttggtgacaaaacggatggcactgtgatagactacatccagtttgctgagtagagtgttggaggctattttacagatgacgtcgccgaagtcaaggatcgctaggatggtcagttttacgagggaatgtttggcagcatgagtgaaggaagctttgttgcgaaataggaagctgattctagatttaatttttgattggagatgcttaatgggagtctggaaggagagtttacagtctagccagacacctaggtatttgtagtcttccacgtattctaagtcagagccgtccagagttaGTACTGATGTGCCACCGAAAGCAGCAGAGGCCGTAATGTTACGGTTTGAAGTGCTGGCTAGGCTAATGCTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82631 lncRNA upstream 124543 67385773 ~ 67387886 (+) True LOC110532586
TU82660 lncRNA upstream 133505 67378576 ~ 67378924 (+) True G74778
TU82658 lncRNA upstream 134502 67377673 ~ 67377927 (+) True G74776
TU82655 lncRNA upstream 141473 67370715 ~ 67370956 (+) True G74773
TU82654 lncRNA upstream 142505 67369698 ~ 67369924 (+) True G74772
TU82737 lncRNA downstream 1045 67513851 ~ 67514529 (+) True G74851
TU82700 lncRNA downstream 63852 67576658 ~ 67576949 (+) True G74814
TU82685 lncRNA downstream 73562 67586368 ~ 67586598 (+) True G74799
TU82764 lncRNA downstream 77430 67590236 ~ 67590560 (+) True G74875
TU82773 lncRNA downstream 82717 67595523 ~ 67595887 (+) True G74879
NM_001165245.1 mRNA upstream 5748 67499279 ~ 67506681 (+) True aifm2
XM_021567740.2 mRNA upstream 5764 67499187 ~ 67506665 (+) False aifm2
XM_021608956.2 mRNA upstream 65936 67443706 ~ 67446493 (+) True gins1
XM_036983300.1 mRNA upstream 99144 67388041 ~ 67413285 (+) False pygb
XM_036983307.1 mRNA upstream 99144 67392749 ~ 67413285 (+) True pygb
XM_021609014.2 mRNA downstream 15805 67528611 ~ 67575049 (+) False psda
XM_021609023.2 mRNA downstream 15805 67528611 ~ 67575049 (+) False psda
XM_021609030.2 mRNA downstream 39730 67552536 ~ 67575049 (+) True psda
XR_005037742.1 mRNA downstream 83871 67596677 ~ 67638420 (+) False glud1
NM_001172529.1 mRNA downstream 83905 67596711 ~ 67637115 (+) True glud1
TU81938 other upstream 727460 66784335 ~ 66784969 (+) True G74139
TU81852 other upstream 753445 66756207 ~ 66758984 (+) True G74067
TU81346 other upstream 1088348 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 1223960 66287679 ~ 66288469 (+) True G73515
TU80729 other upstream 1590144 65915735 ~ 65922285 (+) True LOC110527164
TU83729 other downstream 861699 68374505 ~ 68374929 (+) True G75747
TU86384 other downstream 3058859 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 3523664 71036470 ~ 71076102 (+) True ccdc85a
TU90667 other downstream 6038810 73551616 ~ 73571737 (+) False G82111
TU90669 other downstream 6058260 73571066 ~ 73571737 (+) True G82111

Expression Profile