RNA id: TU83258


Basic Information

Item Value
RNA id TU83258
length 564
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G75322
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67528539 ~ 67529102 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAATAACAAGCCGCACTGCAACTTGTCACGGTTCATGAAGGAAGATTGTCACTTACCCCTGCCATTACAAATGCTAATGTTATAAGAAGCTGCAGAATCCTGATAAACCCGCGTAGCCGTGTGTACGTTCGCTGCCGTTTATCACCTGTTTCCGCATTGAGAAGGCTGACGTTTTAACCTTGGTTGAAAAGGAGCTTTCCATTCACTGCTAAATGGTTCTGAAACTGACAGCTCCTCTGATCCACCTTTGCTCCTGACGAGGAGCAACACTCACACGCGCACTTTCTCCTAATGCGAGCGTGCTAGAGCTCTTCTCTCCCAGAGCGCATGCTATTTATGCTTCCTTGAAGGAGAGATTACAATACATTTCAAACGGATTTGAAATCTGTATAATCTATCAGACGGACCAGATAGCACCCAAGGCTGTAATACCcgtatttgttttttaaatagcATAGTAGGTAAACTATTATAGGAAACAATGTGGACATTAGGCTGCTATCTCTTTACCCAACTTGGCTCCAACTGTTTGCTACAATAAGCTTGCCGTTTCCCAATAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83255 lncRNA downstream 3593 67524716 ~ 67524946 (-) True G75319
TU83251 lncRNA downstream 8327 67519913 ~ 67520212 (-) True G75315
TU83250 lncRNA downstream 9502 67518814 ~ 67519037 (-) True G75314
TU83247 lncRNA downstream 13318 67514812 ~ 67515221 (-) True LOC118966711
TU83182 lncRNA downstream 115283 67402541 ~ 67413256 (-) True G75246
TU83261 lncRNA upstream 2492 67531594 ~ 67531823 (-) True G75325
TU83262 lncRNA upstream 4279 67533381 ~ 67533584 (-) True G75326
TU83263 lncRNA upstream 4640 67533742 ~ 67533961 (-) True G75327
TU83267 lncRNA upstream 10495 67539597 ~ 67539832 (-) True G75331
TU83286 lncRNA upstream 45950 67575052 ~ 67575526 (-) True LOC110527634
XR_005052590.1 mRNA downstream 11724 67515286 ~ 67516815 (-) True LOC118965291
LOC118966711 mRNA downstream 13322 67514760 ~ 67515217 (-) False LOC118966711
XM_021608877.2 mRNA downstream 29311 67446441 ~ 67499228 (-) True ninl
XM_036983326.1 mRNA downstream 35191 67446441 ~ 67493348 (-) False ninl
XM_021608893.2 mRNA downstream 37532 67446441 ~ 67491007 (-) False ninl
XM_036989819.1 mRNA upstream 45952 67575054 ~ 67593740 (-) False LOC110527634
XM_021609108.2 mRNA upstream 109629 67638731 ~ 67642121 (-) True LOC110527672
XM_021609131.2 mRNA upstream 140571 67669673 ~ 67681775 (-) False LOC110527687
XM_021609138.2 mRNA upstream 140571 67669673 ~ 67681775 (-) False LOC110527687
XM_036983393.1 mRNA upstream 197036 67726138 ~ 67793349 (-) False LOC110527713
TU83185 other downstream 140495 67386509 ~ 67388044 (-) True LOC110527584
TU82368 other downstream 517952 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 705723 66818844 ~ 66822816 (-) False tjap1
TU78947 other downstream 3147183 64369902 ~ 64381356 (-) True LOC110526867
TU77510 other downstream 4250787 63277208 ~ 63277752 (-) True G70013
TU83338 other upstream 140487 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other upstream 140487 67669589 ~ 67681730 (-) True LOC110527687
TU83574 other upstream 628859 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 681078 68210180 ~ 68211706 (-) True G75682
TU84158 other upstream 1046491 68575593 ~ 68577744 (-) False LOC110527951

Expression Profile