RNA id: TU82673


Basic Information

Item Value
RNA id TU82673
length 1731
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G74790
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67669671 ~ 67671554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattttggatttaaacatttttatttcagtTCAGTTGTACTGTTTATAAAAGAGTCTGCTTTGATACCAACATATATTTGCatgtctgtgtgaatgtgtgtcacCTCTAATTCTTGGATAAATGTGTGATATGTGCATTTTAATTTGTGAGGTTGTTTTTTAGTACCAATGAATGTGTGTCTGAGTATGTGTCTGAGTATGTGTCTGGTTGTTAGTAAGGCAACATGCAGTCTCGTTTCAGATGGCTTCAAAGGGCAAACACTGTAATGGTTTAAAAGACCTGTTTTAGCCAGGAGAGCAGACACAGGGGAGGGGCCAGGGCACATTGTTGAGTGACAGGAGGTGTGTCTTGTATGACTGAGCAGTAAAAGCATGACGAATGGGTGGAGAGATTTGTTTCCTCTGAGACCAGATGTATGGGATGtcaagcagtggaggctggtgTCAAGGTATTTCACCTGGCGACTACTTGCATCCACTTCTGAGGTAGGCCTACATACTGAATCTGTTGGGCACTTTATCTTTAATCTGATCACATGCAAAAACACCTCAACAGATCTTATTTATTGCCTTTCATTGCAACTAGTGAAATTATAAAGGCCATTGCAAACCCCCCATGTAACCGTTCTCTCTTTGATAACGCTATAATTGCAGACCCAGGTTTGAGTGGAAAGACAGCTGGAAACACCAGACAGTATCTGTTTATGAGATACATAGTTCCCTGTATGTACTGCAGCCCCATTGAAGGTGTGAGACTGGGTAACGTGATCGGTCATGTGAATATGGGGAGTAAAACAGACAATATGATACTGTTAACCCATAACTCCACTTTCACTCCGACCCTGAACCCCGATCTGTCATAATAAGGGGATTTCAGGCATTAAGACACAAGGGGTTAAATATACACAGGCTTCAAACACATATTAATCAACAAACCTGGCTAAAGCATACACTGATATAAGTACATCTACAGTATAAGTACAGGTGTTACGTTAGCTGACAGCGTGAACACTACCAGTAAGTCTCACATTTCCGAAACTCTTggggagaaaaaatatatattgttctGAGAAGTCTTTCTCAACGTTGTggtgtatatgcgtgtgtgtgtatatgcgtgtgtgtactgtatgtgtgataaGGTGATCTTGAGTGGGCACAGGGGATGGTGGGTGAGGATGGTCACAGTGGTAAGGTGGGTAAATGTCGGGGATGAGGTATATGGACGGTAAAGGCATTAGGGTAGGAATGTGTAGAGTGTTTATGGTTGAGGGTTGTTTTGGCTGGGGAGGATCTttttgattttttgttgttgtttccatcGATTCACACAAAGAAAGCATCAGAGAGGAGACGCTGGGGGCAGTAAGGTTCCCCAGGACCCATTGGGTGACGATGGGATACGCAGGACAAGCAGCAGCTCTTCTAAATCAGAAGACGAGGGAGACCGCTGCTAATCACTGAGGTCAGGACCAAcactcctgagagagagaaagaacatttTAAATATTGTGAGTGAGAGAAGCAGAAGTAACAGATTTCTGCTGCAGATGTATTCATCAAAATGGACTTGCCAACATGTGCGTTTTGGCAGAGTAGTGGATTATCTGGCATCTTTGGTGCCACCCTAATTTTCAGTCCCCATGTATTAAGAGGTGTGCTTTCAATATATGAGAACATGTAGTTCCTGCATTAGGATATGGTTGACTGATACCCAGGTGTAAAACATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82774 lncRNA upstream 73079 67596369 ~ 67596592 (+) True G74880
TU82773 lncRNA upstream 73784 67595523 ~ 67595887 (+) True G74879
TU82764 lncRNA upstream 79111 67590236 ~ 67590560 (+) True G74875
TU82685 lncRNA upstream 83073 67586368 ~ 67586598 (+) True G74799
TU82700 lncRNA upstream 92722 67576658 ~ 67576949 (+) True G74814
TU82842 lncRNA downstream 28415 67699969 ~ 67702937 (+) True G74945
TU82853 lncRNA downstream 122227 67793781 ~ 67795363 (+) True G74956
TU82901 lncRNA downstream 128621 67800175 ~ 67800581 (+) True G75004
TU82936 lncRNA downstream 192017 67863571 ~ 67871124 (+) True G75034
TU83012 lncRNA downstream 355082 68026636 ~ 68042452 (+) False G75107
XR_005037742.1 mRNA upstream 31251 67596677 ~ 67638420 (+) False glud1
NM_001172529.1 mRNA upstream 32556 67596711 ~ 67637115 (+) True glud1
XM_021609014.2 mRNA upstream 94622 67528611 ~ 67575049 (+) False psda
XM_021609023.2 mRNA upstream 94622 67528611 ~ 67575049 (+) False psda
XM_021609030.2 mRNA upstream 94622 67552536 ~ 67575049 (+) True psda
XM_021609153.2 mRNA downstream 34237 67705791 ~ 67724360 (+) True mmrn2a
XR_005052605.1 mRNA downstream 444574 68116128 ~ 68117384 (+) True LOC118965297
XM_021609303.2 mRNA downstream 456311 68127865 ~ 68140839 (+) False LOC110527784
XM_021609293.2 mRNA downstream 456320 68127874 ~ 68140839 (+) True LOC110527784
XM_036983557.1 mRNA downstream 603825 68275379 ~ 68295406 (+) False slc2a15a
TU81938 other upstream 884702 66784335 ~ 66784969 (+) True G74139
TU81852 other upstream 910687 66756207 ~ 66758984 (+) True G74067
TU81346 other upstream 1245590 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 1381202 66287679 ~ 66288469 (+) True G73515
TU80729 other upstream 1747386 65915735 ~ 65922285 (+) True LOC110527164
TU83729 other downstream 702951 68374505 ~ 68374929 (+) True G75747
TU86384 other downstream 2900111 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 3364916 71036470 ~ 71076102 (+) True ccdc85a
TU90667 other downstream 5880062 73551616 ~ 73571737 (+) False G82111
TU90669 other downstream 5899512 73571066 ~ 73571737 (+) True G82111

Expression Profile