RNA id: TU83354


Basic Information

Item Value
RNA id TU83354
length 2070
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G75413
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67723624 ~ 67725800 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaaaagtccctgtcttaggtcagttaggatctccactttattttaagaatgtgaaatgtcagatttatttcagcttttatttatttcatcacattcccagtgggtcagaactttacatgcactcaattagtatttggtagcattgcctttaaattgtttaacttgggtcaaatgtttcaggtagccttccacaagcttcccacaataagttgggttaattttggcccattcctcctgacagagctggtgtaactgagtcaggtttgtttgcctcctttgccacaactttggaagtatgcttggggtcattggccatttggaagacccatttgcgaacaagctttaacttcttgattaatgtcttgagatgttgctacaatatatcaacataattttccatcctcatgatgccatctattttgtgaagtgcaccagtccctcctgcagcaaagcactcccacaacatgatgctgccacccccgtgcgttacggttgggacggtgttcttcggcttgcaagccttcccctttttcctccaaacataacgatggtcattatggccaatcagttctatttttgtttcatcaaaccagaggacatttctccaaaaagtatgatctttgtccgcatgttcagttgcaaaccatagtctgtcttttctatggcggttttggagcagtggcttcttccttgctgagcagcctttcaggttatgtcgatataggacttgttttactgtggatatagattcttttgtacccatttcctccggcgtcttcacaaggtcctttgctgctgttctgggattgatttgcacttttcgcgccaaagtacgttcatcagaaggagacagaacgcctctccttcctgagcggtatgacggctgcgtggtcccatggtgtttatacctgcgtactatggtttgtacagatgaacatggtaccttcaggcaaatggaaatggctcccaaggataaagcagacttgtggaggtctaaaagtttttttctggggtcttggctgatttcttttgattttcccatgatgttaagcaaagaggcactgagtttgaaggtagtttttaaaatacatccacagatacacctccaaatgatgccaattagcctatcagaagcttctaaagccatgacattttctggaagtttccaagctgtttaaaggcacagttaacttagtgtatgtaaacttctgacccactagaattgtgatacagtgaactataaatgaaataatctgtctgtaaacctaagtgtatgtaaacctccgacttcaactgtatatacaaatcCACAGGTTTCCTTAGTGCCGTTATCTGTGGGCCAGTGCAGAGGGTAGAGCCAGCCCATTGATTACCATTTACCACAAGAGGAACTGCATTTTTAGATCTTTCACTTTTCATACAGGACAGAAAGGAGGAATATGAAGTGAGAACTTAATGTCCCCTCATCTGAACCACTGTCCTTACCTCTTGACAGTTCGTATTGCCGGTGTGATGATGACGAGGAAGCCTCGTCAGAGATTGTGCCCCTGATAAGTTATGGTTCAACCTCTTGCATAGGCTCTATGTTTTGGCCAGTGTATTCTTAAAACGTTCTCTTTCAAGTCCCTGGTCCTATTGTGTCTGCTGTCTCTTCTATCTAATGTTGGCTTTTGCTTCACTTTTGTCCATACAAATGCGTAAAACAACATATATGCTGCATAGCTTTAGCAGTGCTTGTGGGTTTGCGCTCATAATGTGTGcttatgtttgtgtgcatgtccgCTGAaatcctagtgtgtgtgtgtgtgtgtcaggacagTTTCTCTGTGAATTAAGCTAACAGTACATGGTAGATATTTAAGAAAAATACTTCACCCAAGCAGTAACTAGTGTTTTCCTGTCGTTTGTAACATGCAAGAAAACCATCTAGAATAATCTCAATGTGTAAATCTTTAATGTGTTTTTGTACAGCATCGGGCCTTTGAGTTTACCAAGGAAAGAAAACTATTCTCTATACAGCCTGTCCAATGTATCCATTTTTAAGTAAATAACCTTATTTTAGTACACAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83323 lncRNA downstream 79660 67643690 ~ 67643964 (-) True G75385
TU83322 lncRNA downstream 80024 67643221 ~ 67643600 (-) True G75384
TU83321 lncRNA downstream 80949 67642459 ~ 67642675 (-) True G75383
TU83298 lncRNA downstream 132540 67590854 ~ 67591084 (-) True G75360
TU83296 lncRNA downstream 138518 67584397 ~ 67585106 (-) True G75358
TU83367 lncRNA upstream 25667 67751467 ~ 67751829 (-) True G75426
TU83444 lncRNA upstream 171906 67897706 ~ 67952717 (-) True LOC110532597
TU83499 lncRNA upstream 259367 67985167 ~ 67992028 (-) True G75539
TU83578 lncRNA upstream 412995 68138795 ~ 68142480 (-) True G75612
TU83635 lncRNA upstream 480044 68205844 ~ 68206060 (-) True G75664
XM_021609131.2 mRNA downstream 41849 67669673 ~ 67681775 (-) False LOC110527687
XM_021609138.2 mRNA downstream 41849 67669673 ~ 67681775 (-) False LOC110527687
XM_021609108.2 mRNA downstream 81503 67638731 ~ 67642121 (-) True LOC110527672
XM_036989819.1 mRNA downstream 129884 67575054 ~ 67593740 (-) False LOC110527634
XR_005052590.1 mRNA downstream 206809 67515286 ~ 67516815 (-) True LOC118965291
XM_036983393.1 mRNA upstream 338 67726138 ~ 67793349 (-) False LOC110527713
XM_021609172.2 mRNA upstream 338 67726138 ~ 67793350 (-) False LOC110527713
XM_021609179.2 mRNA upstream 338 67726138 ~ 67793350 (-) True LOC110527713
XM_036983411.1 mRNA upstream 71155 67796955 ~ 67801388 (-) False LOC118965293
XM_036983402.1 mRNA upstream 71155 67796955 ~ 67813744 (-) True LOC118965293
TU83338 other downstream 41894 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other downstream 41894 67669589 ~ 67681730 (-) True LOC110527687
TU83185 other downstream 335580 67386509 ~ 67388044 (-) True LOC110527584
TU82368 other downstream 713037 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 900808 66818844 ~ 66822816 (-) False tjap1
TU83574 other upstream 432161 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 484380 68210180 ~ 68211706 (-) True G75682
TU84158 other upstream 849793 68575593 ~ 68577744 (-) False LOC110527951
TU84152 other upstream 913576 68639376 ~ 68690229 (-) True LOC110527951
TU86507 other upstream 2357040 70082840 ~ 70085385 (-) False LOC118965321

Expression Profile