RNA id: TCONS_00027381


Basic Information

Item Value
RNA id TCONS_00027381
length 625
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id XLOC_013551
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 37541715 ~ 37551134 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTGGTGGTCCTGTtgcttttttaacagtgtagcatGTCTGGTAAGGTACCCAGATCACGCTGTTCCTGGAAGCATTGAAAGACTCCTGAGACCGCCGGCAAACCACAATGATCTCTTCATGCTGAAACCCCTACTTGAGATTCCAGTCTATGACTTCACGCTCCCAAAATATAAGCAGAGGAAGACATGGCTGGAAGCAGGGAAGCATGGTGTAAGCTGAAGTGGCTTGACATTTCAGGCAGTGTGGGGTGAAGTCAATACAAGAGCCACTGGTCTGAAACAAGCCTCCACTTATGTTGCACTTGCTGGAGGGCTGTAAACAGAGAACGACAATGAAAATTCGGGGTTTAATTACAGAATTACAGTCGTgcaataaaaattttatattggACTTGTTTATGAAATATGGGCACTTCTGGCAACGGTTAAGGCAtccattatgaaaataaaaggaaataTAAAATCTAATGTATTTATTAGGGCTGTCAATGTTAACAGGTTAAATGTGATTAATCTGAACAGGTTTATgcattattaattctttaatataaattaattagtttGCCATCAACGCAGCCATATAACTGTGTGATTGATATATGAATTATGACATAACGTGTGCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027380 lncRNA downstream 126270 37410717 ~ 37415445 (-) True XLOC_013550
TCONS_00027379 lncRNA downstream 622728 36902021 ~ 36918987 (-) False XLOC_013544
TCONS_00027378 lncRNA downstream 654246 36868951 ~ 36887469 (-) False XLOC_013543
TCONS_00027377 lncRNA downstream 654246 36868951 ~ 36887469 (-) False XLOC_013543
TCONS_00026664 lncRNA downstream 654246 36868951 ~ 36887469 (-) True XLOC_013543
TCONS_00026679 lncRNA upstream 689367 38238076 ~ 38244027 (-) True XLOC_013553
TCONS_00026682 lncRNA upstream 707480 38256189 ~ 38258669 (-) False XLOC_013554
TCONS_00027383 lncRNA upstream 741372 38290081 ~ 38297955 (-) True XLOC_013555
TCONS_00026985 lncRNA upstream 827969 38376678 ~ 38378205 (-) True XLOC_013556
TCONS_00027384 lncRNA upstream 1210625 38759334 ~ 38765900 (-) False XLOC_013557
TCONS_00026672 mRNA downstream 134480 37380125 ~ 37407235 (-) True XLOC_013549
TCONS_00026671 mRNA downstream 186049 37283765 ~ 37355666 (-) True XLOC_013548
TCONS_00026670 mRNA downstream 289679 37245331 ~ 37252036 (-) True XLOC_013547
TCONS_00026668 mRNA downstream 300600 37237714 ~ 37241115 (-) False XLOC_013546
TCONS_00026674 mRNA upstream 288251 37836960 ~ 38087875 (-) False XLOC_013552
TCONS_00026675 mRNA upstream 289693 37838402 ~ 38088099 (-) True XLOC_013552
TCONS_00026676 mRNA upstream 660346 38209055 ~ 38216584 (-) False XLOC_013553
TCONS_00026677 mRNA upstream 665069 38213778 ~ 38245062 (-) False XLOC_013553
TCONS_00026678 mRNA upstream 668101 38216810 ~ 38244871 (-) False XLOC_013553
TCONS_00026673 other downstream 126362 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026662 other downstream 1076249 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026656 other downstream 1968420 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026632 other downstream 4447974 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026625 other downstream 5014611 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026691 other upstream 1637465 39186174 ~ 39188401 (-) True XLOC_013560
TCONS_00026695 other upstream 2037837 39586546 ~ 39586665 (-) True XLOC_013565
TCONS_00026696 other upstream 2067066 39615775 ~ 39615905 (-) True XLOC_013566
TCONS_00026709 other upstream 3154079 40702788 ~ 40708524 (-) True XLOC_013577
TCONS_00026751 other upstream 6516324 44065033 ~ 44073428 (-) True XLOC_013607

Expression Profile

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