RNA id: TCONS_00026677


Basic Information

Item Value
RNA id TCONS_00026677
length 6663
RNA type mRNA
GC content 0.42
exon number 28
gene id XLOC_013553
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 38209055 ~ 38245062 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTGGGGGGAGGGACTTTGGTTGGTCCACCCGAagtgttaattaaaataaaaatggatcCATTTTAGACACAGATCTTAAATTAAcgcataaaaatattttacaattctcATTGTTCGTTCATTCTGAACAGGCGCTATCGAGGACAGCTATATGTCTGTTTTGGGGTCCATCAGGCATGGGTCCTATCGCAGAGACACCCATCCCCACGTGAATGTGCAAGCATGATGGTGTACTGTAAATGAGTCGCAGATTTTATTTCCAGAAGTTATAATTAATATCTCAACAGTGTTTATTTCCATCAGCACATCGTTTAAGGGTGCAGTCGTGAAGCAATGGCAACTTTTCGGAAGAAGGTGGACAACCGTATTCGGGTCCAGATAGAAAACGGAGTCGCTGAACACCACCGCTCCATGTTCGTTATAGTTGGGGATCGTGGAAGAGATCAGGTTGTCATACTTCACCACATGCTGTCTAAAGCAACAGTCAGAGCCCGGCCGTCAGTGTTATGGTGCTACAAAAAAGAGCTCGGATTTAGCAGCAACCGAAAGAAGAGGATGCGTCAGCTGCAGAAGAAGATCAAAACAGGCACGCTGAACCTAAATCAGGATGATCCTTTTGAGCTCTTTGTTGCTGCGACCAACATTCGCTACTGCTATTACAACGAAACACACAAGATCCTGGGAAACACTTTCGGCATGTGTGTCCTACAGGACTTTGAGGCTCTCACCCCCAATCTTTTGGCTCGGACAGTGGAGACGGTGGAGGGTGGAGGGATTGTGGTCATTCTTTTAAGGACGATGAACTCACTAAAGCAGCTCTACACGATGACAATGGATGTCCATTCTCGATACAGGACAGAGGCTCACCAGGATGTTATTGGAAGATTCAATGAGAGATTCATCCTGTCTCTATCCTCCTGTAAGTCATGTGTTGTGATTGATGACCAGCTCAACATTCTGCCCATCTCTTCTCATGCTACCAACATCAAACCCATTCCTCCAAAAAAACAGGATGATGGACTTTCTCCGAGAGAACAGGAGCTGAAGGACCTGAAGGAGTCTTTACAGGACACACAGCCGGTTGGGGTTCTAGTGGACGGCTGTAAAACTATGGACCAGgCCAAAGCAGTGCTGAAGTTCATTGAGGCCATTTCAGAAAAGACGTTGCGCAGCACTGTAGCTCTTACTGCTGCTCGCGGTCGAGGCAAGTCTGCTGCACTGGGATTGGCAATGGCTGGAGCTGTCGCATTTGGCTATTCAAATATTTTTGTCACATCACCCAGTCCAGACAATCTGCACACGTTGTTTGAGTTTGTGTTTAAAGGATTTGATGCCCTGCAGTATCAGgaaCATCTGGATTATGAAATAATCCAGTCTCTGAATCCAGAGTTTAACAAAGCTGTGGTTCGAGTTAACATCTTTAAGGAACATCGGCAGACCATACAGTACATTCATCCAGCGGATGCAGTGAAGTTAGGACAGGCCGAGCTGCTAGTCATAGACGAGGCTGCTGCTATTCCTCTGCCTTTAGTCAAGAAACTACTCGGACCTTACCTTGTGTTTATGGCATCTACCATCAATGGCTACGAGGGCACCGGTCGCTCCCTGTCCCTCAAGCTGATTCAGCAGTTAAGACAGCAGAGCTCAGAGAGCCAGCAGAACCTCTCAGCGGAGAACAGAAACACCAGCACCGCCAGACTGGCTGCAGCACGAAGCCTTCATGAAGTGACCCTCCACGAGTCCATCCGCTATGGTCAGGGAGATCATGTGGAGAGATGGCTGAATGACCTGCTTTGTTTGGACTGTTTGAGTGTACCACGCATCATTTCCGGCTGCCCTTTACCACAGACCTGTGATCTTTACTATGTGAATCGAGACACGTTGTTTTGTTATCACAAGGCTTCTGAGGCTTTCCTTCAGCGTCTTATGGCACTTTACGTAGCATCGCATTACAAGaattcccCCAATGACCTTCAGATGCTCTCGGATGCTCCAGCTCATCATCTGTTTTGCCTATTGCCGCCCGTTCCACCGACACAGAACTCACTGCCTGAAGTCTTAGCAGTCCTGCAGGTATGTCTGGAAGGAGAAATCTCACGTCAGTCTATACTCTCCAGCTTGTCCAGAGGGAAGAAAGCTTCTGGTGACCTTATTCCCTGGACTGTTTCCGAACAGTTTCAAGACTCAGAGTTTGCAGGTCTCTCAGGTGGCAGGATCGTGCGTATCGCTGTGAATCCTGATTATCAAGGGGTAAACTACTTCTCTTTTGTTTTGTATATAATCCCAATCAGGTTCATTATAAGCATGTGTTGTGATATCCCACGTGTGATTGATTTTGTCATTCTTCAGATGGGATATGGCACTCGTGCATTGCAGCTGCTGCAAAGATATTATGAAGGCCAGTTTCCTCTTTGGGATGAGCAAGAACAGACAATGACCAGTGCAATCACATCTGTGAGCAGTGAGGCTGTCAGTCTGCTGGAGGAGGTGGTTTCTCCAAGGAAAGATCTGCCACCACTGCTGTTGAAGCTGAATGAAAGGAGAGCTGAGCGGCTGGATTACCTGGGAGTTTCTTATGGCCTCACTCCTCAACTACTGAAATTCTGGAAAAAGGCTGGATTTGTTCCTGTTTATTTGAGACAGACTCCGAATGACCTGACAGGCGAGCACTCCTGCATTATGCTCAAAGACCTCAATTCTGAAGATTCAACAGACCAGAACCAGTGGCTCTCTGCTTTTTGGAAGGATTTCCGGCGGAGGTTTCTCTCGCTGATGTCCTTCCAGTTCAGCAAATTTAGTTCGACTCTGGCTctaaatatactacagaacaaGAGCGCTAAAGATGACAGCACGGCAGTTCTCACAAGTGCTGAACTCGCAGCCACCTTCACTCCATATGACCTGAAGCGTTTGGAGATGTATTCCAGAAACATGGTGGACTATCACCTCATCATGGACATGATTCCTGTTATTGCACGCATGCACTTCCTCAAACAGTTTGGTGACATCTCACTTTCTGTGGCCCAGAGTGCTTTACTTCTGGGAATTGGCCTTCAGCACAAGAGTGTAGATGAGCTGGAGAAGGAGATTGGTCTGCCCAGTTCTCAGCTTATGGGCCTGTTCAACCGTATCATCCGTAAAGTGGTGCAGTTCTTCAACACTCTTCAGGAGAGGGCTGTTGAAGCAGAGATGGTGGCCACTAAAGACATTAGCCTGGAACCAACAGTGCAGACACTGAATGAAGATCTGAATGATGCAGCCAAAGAGTTTGACGAGAAACACAAAAAGGACATCGAGAAGATTAAGGATATGAATCTTTCAGAGTACATGATTCGAGGAGATGATGAGGAATGGGATCAAGTGTTGAAGAAAGCAGGACATACAGCTATTGTTAGCATAAAAGGTGACAAGAAAAGGAAACTAGAAGGCACGAACCAAAAAGAACAACGCGAAGGCAAGAAGATGAAGAAAATAAAGGACAAAAGGGGCAAATTTGGAAAGAAAACATGAAATGTACTTTAAAAGGAATTTTGAAAGTGACTGtgcttgttttttattatgtttttttttttttaagtttaattcaGGACAAGAATCCAAATAAAAGCTTAAGATGTTTGGATAAAGATTTTGAGagactattttgttttattttatttatattgtgggAGGAGGATCCCaggtattttcattttttttttttattcccagTTTGCAGattttctgttctttttccaTGAAAATTATCCTCGGGAGCATAACACTATTATTGTATGAACATACTTTGCTGTCTGTTAAATAATTATGATGACTACACAAGACTCATTGATTGCTAAACCCAGtgagtttaaatattttatttagacagAATTTGGGGAAATGGCTCTAGATGAATCATGCATAACCTTTTCTCTCATGAACAGTATATGAACTCATAGCTAATCAATGTGATTTAATACCAGTGCACATTCTATATTGCTTTCAGAAAACATTTAGCTTAATTGAAATGATAGAGTTAAGCCTTGTGTAAATCATTATACAAAATTAATACAGTGCTGCAAAATTGTTGGATAGTCTTTAGGGAAATGTGTTGAACAGGCTGAAAGTCGGTGATCTTTGTGCTGTCATTGTTTGGTCATTCATCATTTGTGGATGTCTAATGACTGCATTGCACAACAGTGCTTCGATAACGAGCTGTGCTGCAAGAAGCAAAGAACTTGCACGTATTTTCTGCGGCGTATTTTCTCGAGTAAAAATGGAGATTCCTATCGTGGATTTCAACGTGTTTGAACTCGGAAAGACGAATGTGTCGGCTGATGAACTGGATGATTTGAGTAAAGAAGTGAAAAGAGCCTTCACCGATGTGGggtttgtttatctgaaaaacacgGGAATAAGTCAGGAAGAGGTTTGTGAGGATTTCTTTTACGTGATAGTAGTTATGAGAAGTTCAGTAGCTCGCTTACTGTTTTTTTGTCGACTGTTTCAGGTAGACAATGTTATGGCTGTTTCAAAGAAGTTCTTCAGTTTGCCAGAAGACGTGAAAAAGTCTTTCAGCAGGGGTAGTTTCCCATGTAACGAGAACCATGGCTGGGTTTCGGTAGAAACGGAAAGGCACGTCGAACGACTCTCGGGTGATGATCAGCTTCTAAACTCAGGAATGATGAAGATGCGTCTAACGACTGTATCTTTTGTCATTTCACAGTTTGAACCCTCGGCGTCCTGGTGATTTGAAGGAGGCGTTCAATACATCGACTTTGAGTGCAGATATTGTAAATACAATTCTTCAGTTTGTTCTCCTACTTTAATCATAGCATGTTTTTGTGGGTTCAGTTTTACAAATCTTGAAGAGGTGACAAGATCAAAGAGATcaaattttatgcaaatatttCATGTTAAAAAATGGCATAACAAATGTGCATGATTGTTAAagcaagtttattttaaatatcccTAAAACAATATGTAACGAATACTGAGTCTAACTATAGAAACTGATAAATTAAGGCAGAATTGCACAAGAAAATGCCtggtcttttttatttaaataaaaataaataaataaatagaaaatagaatGTAGTTGGGTGGAAATACATGGAAAGAATCCATTAATCATTCATTTCCAGAACTGTAAAAAGTATGCAACTAAAGAACCAGGTTCTAGAGAATACTGAATCTTGTTCCCCCATTCATAATCAAAAGCTTAAGTGCCATAAAGCAGTGTTATCTGAGTCTTGAAGTAGCAGCAGTTCAAGTCTGGCATAGTGATTGATGGTCATGGTTTAAGCCGATACTAACAATAATAGACCTTCCAGGTTGAAAGATCTTGTGACTTAAAATGAACCCTCAAAACCCAGAACAAGATCCTGCAAGGTAAATTCTTCAAAAATGGTGCAACAGAAATTGGTGCAATGATACTtactacttttacatttttttaaacagccattttaatatattttttgacagTTTAGCTTATGacttttattaaatgcattatggTCATGTTTAAATACCCTTTATAGACTCTAAAGCAAGTGGCAGACTTCCTGGAGGGTTCTTAATGGTTTAATTTAGACCTAATTCTTCACTTAAAATCTTTTGCAGTTCATTTTCTTAATTCTCAACCAGTTTCTGGAGACATTTCTTGTCCATCGGTATATTTATCGGTATATGTTTTTTGGACATTTTATTTGCAAACAAACTGCTAAATACTTATTCACATCTGAATACTGCCAGGCCTTGTTAACaattatacattaataaataaatacaagattAACCATAGTTGTTAAGCTTTGGAATTGATGcgcttgagaaaaaaaaaataaaatcttgacttgCATAATAATGCACACTATTTAAAGCCATTCAAAGTCAGCATTTACAAAGTTTGTCATGCTTGAGTaaattctttaggtgaacaattagtCTGTAAACACCTAatcccccccaccaccaccaccccccACCAAAAATCTTTGGTAGTCTTCAAAGTCTGACCATACAGAAATATTAATGAAATCAACTTTTAATGTGGGATTTAAAACATTACATGACTCTCAATGTGCTCAGAAGTGGCCTTCAGAAGGAGTTGCTGATTTCCGAGATGTCCAGGTATCATTTTTCCTGCGCTGTAAGGAACTTTCTCTGCGGGTGCTGCGACTGATGGCTCTTGGTTTGGGGCTGGAATCTGAAGTCTTCCTTGATGCTCACAAGCTAATTGGAAGTAAGTAAAATCATATGCACTTCCGCATCCTCCAATTGAGGTCTTGCTTTGAGAAGTGGATTTTAAGGTGTAATTGTTTGTAGGTGATGTGAATAGAACCACACTACGGTCTCTGTTCTACCCTCCTGTCAAGAGCACAAGTGTGAAGGAAAATCAGCTGCGATGTGGTGAACACTCAGATTATGGCAGCATCACTCTGGTCTTTCAAAGCCGTGAAGGTGGACTGCAGGTGAGCACCAGTACAGGACAACATTCTGTTCATTATTGTGGATCTTTATCATTTAGAAAGCATATATTTGTGTCTGCATATTCTCCAGGTTTTAAGCCGGGCTGGTGAGTATATTTCTGCTCCGAGTATTTGTGGGACGGTTCTGGTTAACATTGCAGACATGATGCAAAGATGGACCAGCGACATCTATGTGTCTGCC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1543 Predicted to enable rRNA cytidine N-acetyltransferase activity and tRNA binding activity. Predicted to be involved in rRNA acetylation involved in maturation of SSU-rRNA. Predicted to act upstream of or within rRNA processing and tRNA processing. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; immature eye; nervous system; neural plate; and segmental plate. Orthologous to human NAT10 (N-acetyltransferase 10).

Ensembl:

ensembl_id ENSDART00000189092

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027382 lncRNA downstream 662644 37541715 ~ 37551134 (-) True XLOC_013551
TCONS_00027381 lncRNA downstream 665069 37541715 ~ 37548709 (-) False XLOC_013551
TCONS_00027380 lncRNA downstream 798333 37410717 ~ 37415445 (-) True XLOC_013550
TCONS_00027379 lncRNA downstream 1294791 36902021 ~ 36918987 (-) False XLOC_013544
TCONS_00026664 lncRNA downstream 1326309 36868951 ~ 36887469 (-) True XLOC_013543
TCONS_00026682 lncRNA upstream 11127 38256189 ~ 38258669 (-) False XLOC_013554
TCONS_00027383 lncRNA upstream 45019 38290081 ~ 38297955 (-) True XLOC_013555
TCONS_00026985 lncRNA upstream 131616 38376678 ~ 38378205 (-) True XLOC_013556
TCONS_00027384 lncRNA upstream 514272 38759334 ~ 38765900 (-) False XLOC_013557
TCONS_00027385 lncRNA upstream 514272 38759334 ~ 38768491 (-) False XLOC_013557
TCONS_00026675 mRNA downstream 125679 37838402 ~ 38088099 (-) True XLOC_013552
TCONS_00026674 mRNA downstream 125903 37836960 ~ 38087875 (-) False XLOC_013552
TCONS_00026672 mRNA downstream 806543 37380125 ~ 37407235 (-) True XLOC_013549
TCONS_00026671 mRNA downstream 858112 37283765 ~ 37355666 (-) True XLOC_013548
TCONS_00026670 mRNA downstream 961742 37245331 ~ 37252036 (-) True XLOC_013547
TCONS_00026680 mRNA upstream 1878 38246940 ~ 38270077 (-) False XLOC_013554
TCONS_00026681 mRNA upstream 2735 38247797 ~ 38270596 (-) False XLOC_013554
TCONS_00026683 mRNA upstream 21941 38267003 ~ 38271298 (-) False XLOC_013554
TCONS_00026684 mRNA upstream 22189 38267251 ~ 38270430 (-) True XLOC_013554
TCONS_00026686 mRNA upstream 925065 39170127 ~ 39188664 (-) False XLOC_013560
TCONS_00026673 other downstream 798425 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026662 other downstream 1748312 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026656 other downstream 2640483 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026632 other downstream 5120037 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026625 other downstream 5686674 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026691 other upstream 941112 39186174 ~ 39188401 (-) True XLOC_013560
TCONS_00026695 other upstream 1341484 39586546 ~ 39586665 (-) True XLOC_013565
TCONS_00026696 other upstream 1370713 39615775 ~ 39615905 (-) True XLOC_013566
TCONS_00026709 other upstream 2457726 40702788 ~ 40708524 (-) True XLOC_013577
TCONS_00026751 other upstream 5819971 44065033 ~ 44073428 (-) True XLOC_013607

Expression Profile

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