RNA id: TU86045


Basic Information

Item Value
RNA id TU86045
length 518
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G77834
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 69949732 ~ 69950249 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCATATATTTCATCTTCGGTGTAGTACAGGTCTAGAGAGAGCTGGAGGAAATTGTTTATGATTAAACATGAAAACAGATTCAGCCTTTCTGCAATAACAAACACATTTATAATCATGTTACTCTTTTGTACGATCCTACAAAACGTTGTTTGATACCCACTGAAATGACAAATTGAGTGACAGTACGATAAAACAAGTCCATTTCCTGTTGACGGGGAACCCTTTTAGGGCGGGACACTCACGGTGAGCAGGTAGATGAGGTCCATGTTGGGTTCCACCTGGGCTGCGGCACTCTGCAGGGACACCAGCTCGTTGAAGGTGAGGTAGAGCTGGTGCATCTTTACGATGTTCACCTTGTCGTCGTCCACCCAGTCGGAGAAGACCACGTGCACGGCGATCAGGTCCTTCAGGTGGACTCCCAGGATGGGGACCTTGAAGCCTTCGGAGTCTGTGAACGCCTTGCGGTAAGCACAGTAGTTCCCATTGGAGGAGACCAGCTCCGTCATCTCATTCCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86042 lncRNA downstream 2921 69946319 ~ 69946811 (-) True G77831
TU86041 lncRNA downstream 3825 69945565 ~ 69945907 (-) True G77830
TU86037 lncRNA downstream 8505 69940965 ~ 69941227 (-) True G77826
TU86018 lncRNA downstream 37747 69911755 ~ 69911985 (-) True G77808
TU86014 lncRNA downstream 41479 69908011 ~ 69908253 (-) True G77805
TU86047 lncRNA upstream 4448 69954697 ~ 69955009 (-) True G77836
TU86004 lncRNA upstream 6883 69957132 ~ 69959045 (-) True G77795
TU86052 lncRNA upstream 13731 69963980 ~ 69970851 (-) True G77840
TU86008 lncRNA upstream 24839 69975088 ~ 69975578 (-) True G77799
TU86067 lncRNA upstream 38011 69988260 ~ 69988497 (-) True G77855
XR_002474228.2 mRNA downstream 380578 69566182 ~ 69569154 (-) False LOC110528285
XM_021610045.2 mRNA downstream 503999 69437322 ~ 69445733 (-) True exo1
XM_036983973.1 mRNA downstream 504054 69437322 ~ 69445678 (-) False exo1
XM_021610053.2 mRNA downstream 504080 69437322 ~ 69445652 (-) False exo1
XR_005052655.1 mRNA downstream 517544 69421067 ~ 69432188 (-) True LOC118965314
XM_021610399.2 mRNA upstream 50068 70000317 ~ 70022403 (-) False LOC110528376
XM_036984159.1 mRNA upstream 79796 70030045 ~ 70035653 (-) False LOC110528384
XM_036984148.1 mRNA upstream 79796 70030045 ~ 70035784 (-) False LOC110528384
XM_036984141.1 mRNA upstream 79796 70030045 ~ 70036201 (-) False LOC110528384
XM_036984154.1 mRNA upstream 79796 70030045 ~ 70036532 (-) False LOC110528384
TU84152 other downstream 1259503 68639376 ~ 68690229 (-) True LOC110527951
TU84158 other downstream 1371988 68575593 ~ 68577744 (-) False LOC110527951
TU83653 other downstream 1738026 68210180 ~ 68211706 (-) True G75682
TU83574 other downstream 1787730 68157961 ~ 68162002 (-) True sdhaf4
TU83339 other downstream 2268002 67669589 ~ 67681730 (-) True LOC110527687
TU86507 other upstream 132591 70082840 ~ 70085385 (-) False LOC118965321
TU86508 other upstream 132591 70082840 ~ 70085385 (-) False LOC118965321
TU86509 other upstream 132591 70082840 ~ 70085009 (-) False LOC118965321
TU86510 other upstream 135689 70085938 ~ 70087657 (-) False LOC118965321
TU86511 other upstream 135689 70085938 ~ 70088714 (-) True LOC118965321

Expression Profile