RNA id: TU86477


Basic Information

Item Value
RNA id TU86477
length 1645
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G78209
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70054698 ~ 70056487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAAGGTATAAACAACACAGTGTAGGAAAAGAAAGCTCCAATACAGCACAGACTTCGAATCACTATGGCTAGAAATATGTGTATATCTTCCTCTCATTTCTGATGCTATGATTTAGTCAAATTCTGTGTGAATGTTTGAAACATACCGTATACTGTATAGGATTTAGAGACCACAGAAATGTATACCTTTTCACAATCACTTCTACCGCTCCGTATTCACATAGAAAATATAGAAAAGTTATCACAATGCTGAATTGACAGTACGTCATAAGACTAGCATAGAGCAAGACTTAAACTGACCTCCGATGATTCATGCAACACTGTGATGCAGAGGAGAATACCGTGACATAGAGAAGGGGTTAACAGACTGGAGAATGTGTATCAAGAACGCAAACATCTCATCACATCATACAATATATTAATGCACATAACAATAGGTGAAATGGCGTGTTTGTGAATACATTTTTCATTCCATTTTTCAACTTCTCTTATATAAACAGTTATTGCGTTTGACCCTTTAATGCCAGGTAgacaaactcattccatggagggcgtAGTGTCTGCTGGTTGTTGATTTTCCCTGttaattaagacctagacaacaagGTGCGGGAAGTTCCTTATAATCAGTGGCCTTAATTAAACAATGAAGTACAAGAGAGGAAGCAAGAACccgcagacactcagccctccgcggaatgagtttgacatgcACTTTCATGTATATGTTCTGTGTGATGATTGTCTTGTGGACTCAAAACCACAGCCAAATAATTATTTTAGTCATATATCTAACCAGAAGGTTAAAAGTGAACTGTTAACCAGTAAACAGTCATGTTGTTTATCAAATAACAATCACTGAAAAGACTCTACTCTGAGTCTGAATTCTATCACTACTGTAACAGTATCTTGTCAATTTACTGTGCCATAGCAATGTGCTGCATTGGTATTGTAAAATGGATGAGTTACAACTAGCCGGTTAGATTGATAAACCTGTCAAGTATGTAATTTACAACATATTGCATTCGCGAGAGattttgaccaatcacaacaAACACAACAGGTGCTGTAACCTGATTTAAAGTTGCTTTTTACTGTGGCTACAATGCAGCGAGAATTGTTTAATCATGATATCAGTTGTATAATGTCGAAGAAAGCTATTGTTGTTTATTAAGTAATGACCAAGCTTGGCATTAAAGGGCTCTATTGTTTTTTACAGTATAATTTGAATACAATTCATTTATCCTACTTTAGTAATAATCACAAAGTTGCCATTTCAGGTCACAGCACAGATTGTTCAGTATTGTTGGGTTTCTATTGGAGGCCGTGAGACCAGATGGCAGGTTAAATAGGAGTCCTTATCAGTAGAATATTACTGCTGTTATCAAGTCTTTAAAACACCCACCTGTATTGATGGTTATCTGTATTGATAATTATGTCCAATGTAAGTCGATTTGTAACTTGGCAAACCCAGTAATACCCCAAATGAAGGgtcaatatacagtatgtctcagATAATGTGTTCTAGGCTACTGTTGATATCAGCAATAAAGTATCTTAGATGAAGTTGTGATGGTGACGTCCAGGAAACTGTGTTTCCCCCCTCTGTATTATGGAGCCTAAACAAACCTCTGGTGACACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86487 lncRNA downstream 566 70053954 ~ 70054277 (-) True G78219
TU86486 lncRNA downstream 1649 70052584 ~ 70053194 (-) True G78218
TU86485 lncRNA downstream 3613 70051018 ~ 70051230 (-) True G78217
TU86474 lncRNA downstream 22816 70030061 ~ 70032027 (-) True LOC110528384
TU86082 lncRNA downstream 29078 70025356 ~ 70025765 (-) True G77870
TU86499 lncRNA upstream 14249 70070736 ~ 70071200 (-) True G78231
TU86501 lncRNA upstream 16587 70073074 ~ 70073276 (-) True G78233
TU86505 lncRNA upstream 23571 70080058 ~ 70080456 (-) True G78237
TU86574 lncRNA upstream 130194 70186681 ~ 70188815 (-) True G78301
TU86586 lncRNA upstream 151081 70207568 ~ 70209802 (-) True G78313
XM_036984154.1 mRNA downstream 18311 70030045 ~ 70036532 (-) False LOC110528384
XM_036984141.1 mRNA downstream 18642 70030045 ~ 70036201 (-) False LOC110528384
XM_036984148.1 mRNA downstream 19059 70030045 ~ 70035784 (-) False LOC110528384
XM_036984159.1 mRNA downstream 19190 70030045 ~ 70035653 (-) False LOC110528384
XM_021610399.2 mRNA downstream 32440 70000317 ~ 70022403 (-) False LOC110528376
XM_036984184.1 mRNA upstream 65 70056552 ~ 70066441 (-) False LOC118965320
XM_036984177.1 mRNA upstream 65 70056552 ~ 70075898 (-) True LOC118965320
XM_036984194.1 mRNA upstream 26348 70082835 ~ 70088715 (-) False LOC118965321
XM_036984204.1 mRNA upstream 39202 70095689 ~ 70111416 (-) False LOC110528401
XM_036984207.1 mRNA upstream 39202 70095689 ~ 70111417 (-) True LOC110528401
TU84152 other downstream 1364614 68639376 ~ 68690229 (-) True LOC110527951
TU84158 other downstream 1477099 68575593 ~ 68577744 (-) False LOC110527951
TU83653 other downstream 1843137 68210180 ~ 68211706 (-) True G75682
TU83574 other downstream 1892841 68157961 ~ 68162002 (-) True sdhaf4
TU83339 other downstream 2373113 67669589 ~ 67681730 (-) True LOC110527687
TU86507 other upstream 26353 70082840 ~ 70085385 (-) False LOC118965321
TU86508 other upstream 26353 70082840 ~ 70085385 (-) False LOC118965321
TU86509 other upstream 26353 70082840 ~ 70085009 (-) False LOC118965321
TU86510 other upstream 29451 70085938 ~ 70087657 (-) False LOC118965321
TU86511 other upstream 29451 70085938 ~ 70088714 (-) True LOC118965321

Expression Profile