RNA id: TU86127



Basic Information


Item Value
RNA id TU86127
length 1480
lncRNA type read_through
GC content 0.42
exon number 2
gene id G77903
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70082837 ~ 70097099 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTTGTacatttctttattaaaaatgtagttatttgttaCATATTTGTTAGCATTTTGCAAAAAAACATGATTAtgtgtctctctgaaatgaaaaagttatagattttaaacaaatacatgtctgtcattgaacaaccacATGCCACGATTAGATAGTGAGAAAACCCACCAATCTCGTTCATAATTTCATTCAACAttaaaagctaatttaccaacTCAGCTCCCATTGAGTAGCCTATTAGGTACTAAAaggaaagacagatggagagcTGTTTTTCAGTTGCTATTAGCTCTATTAATCCCTTTGAAATAGCCAGTCAGTCTCTGTTGGGCTCAAGACCCCTTAACAAATTGGTGTTAAAAGGAGTTGAATCAGCAGGGCTCTGAGTGCAACATTAAAGCTCCCTTCATCACAAGCCCTTTGCTGGCCCAGCATCAACATAACATATTGATCCCTTTCAGTCTGAATTTTGGAGCTGGCAACCAGTGGGGGAGGTGCCTGACACTCTCACAGCTCTGTAATGATTATCCCCAGTGCCCACCCACCTGTGCTCTCAGATAACTAGCACTAATTAAAATGTACTTTGGTAAAATATCAGAGATATTGgctttgaatgcttttcttgagCTGTAAACTGTAGATAGTACAGAGGGGATCTCACTATGCAAGATCCACAGAGAAGAGACAGGTCCTATTCTAGGAACATTTACATCCATGGACATTGGTCAATACAGAGTATAGATAGAACATCACATGGATAAACAGTGTCAGGCGTTAGTTTTGTGTTTTCCATTGAGGGTAAGCGCATTAGGTGCTATGAAACAGTAGCCATGATTAACCCTATACGCAAACGTTTCCTTTGATAATATACACTGGTTGCTATCGGAAATCATACATACATTGAATTGATTGGAGTACTGATTAGAAGAGCtatttcacacagaaacactaTTTTTACAGATGGTCATGAGGACTGAACTGGGGTTGTTGTGATTCGTGTGCGTTTTCATGGGTTGGCTCATTCAGCTTGTGCTTAGAACATAGGCTATCACCTTGTTAGCGCTCTGTCATATTGGGTTGGTCAGTCTTAATGTAGCTCTGTCCAGCTGTGCTCTCCATAGACCAGGTGAATGGAGGCCTAGCTTTGGAAGACTCAATATCTGCTTCTTTTCATGGAGAGAATGGTGTAGTCACGATAGTAGGGGAGGCCTAGCTTTGGAAGACTCAATATCTGCTTCTTTTCATGGAGAGAATGGTGTAGTCACGATAGTAGGGGAGGTTGTGGTGGCACGTGGTGCTGAGAGTCTGTGGTCACATTGACCAGGGCAGTGGTCCGGTCAGGCCAGTCTAGCTGGTTtcagaaagcatggccagcactGTGTCGGCCTGTGTGGCTACGTTGGTGCTGGAGTGACCAGAGAGCTTGTTGAGCGTCTCCTTCAGGTTAAGAGATTCCATTTCTTCCTTCATCGAGCCTA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU86122 lncRNA upstream 9963 70072670 ~ 70072874 (+) True G77898
TU86120 lncRNA upstream 12125 70070490 ~ 70070712 (+) True G77896
TU86119 lncRNA upstream 14180 70068453 ~ 70068657 (+) True G77895
TU86114 lncRNA upstream 19955 70060219 ~ 70062882 (+) True G77891
TU86104 lncRNA upstream 27224 70055025 ~ 70055613 (+) True G77890
TU86085 lncRNA downstream 39782 70136881 ~ 70143694 (+) True chchd1
TU86185 lncRNA downstream 89745 70186844 ~ 70188823 (+) True LOC110528418
TU86221 lncRNA downstream 172694 70269793 ~ 70270056 (+) True G77976
TU86222 lncRNA downstream 183411 70280510 ~ 70280734 (+) True G77977
TU86226 lncRNA downstream 189643 70286742 ~ 70286974 (+) True G77981
XM_021610425.2 mRNA upstream 29920 70051483 ~ 70052917 (+) False zgc:153981
XM_021610434.2 mRNA upstream 29920 70051548 ~ 70052917 (+) True zgc:153981
XM_021610378.2 mRNA upstream 83340 69990307 ~ 69999497 (+) False nvl
XM_036989830.1 mRNA downstream 24913 70122012 ~ 70122911 (+) True LOC118966712
XM_021610459.2 mRNA downstream 39731 70136830 ~ 70143694 (+) False chchd1
XM_036984226.1 mRNA downstream 66092 70163191 ~ 70188938 (+) False LOC110528418
XM_021610554.2 mRNA downstream 97196 70194295 ~ 70228504 (+) False zswim8
XM_021610519.2 mRNA downstream 97197 70194296 ~ 70228504 (+) False zswim8
TU83729 other upstream 1707908 68374505 ~ 68374929 (+) True G75747
TU81938 other upstream 3297868 66784335 ~ 66784969 (+) True G74139
TU81852 other upstream 3323853 66756207 ~ 66758984 (+) True G74067
TU81346 other upstream 3658756 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 3794368 66287679 ~ 66288469 (+) True G73515
TU86384 other downstream 474566 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 939371 71036470 ~ 71076102 (+) True ccdc85a
TU90667 other downstream 3454517 73551616 ~ 73571737 (+) False G82111
TU90669 other downstream 3473967 73571066 ~ 73571737 (+) True G82111
TU92487 other downstream 4812126 74909225 ~ 74909806 (+) True G83836

Expression Profile


TU86127 Expression in all Baseline Samples

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TU86127 Expression in each Bioproject

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TU86127 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 80.
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