Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00026682 |
| length | 902 |
| lncRNA type | retained_intron |
| GC content | 0.44 |
| exon number | 3 |
| gene id | XLOC_013554 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 38246940 ~ 38271298 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0008150 | biological_process | biological_process |
| GO:0005575 | cellular_component | cellular_component |
| GO:0003674 | molecular_function | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-2020 | Predicted to enable RNA binding activity. Predicted to act upstream of or within cell differentiation and negative regulation of translation. Predicted to be located in cytoplasm. Orthologous to human CAPRIN1 (cell cycle associated protein 1). |
| ensembl_id | ENSDART00000145383 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00026679 | lncRNA | downstream | 12162 | 38238076 ~ 38244027 (-) | True | XLOC_013553 |
| TCONS_00027382 | lncRNA | downstream | 705055 | 37541715 ~ 37551134 (-) | True | XLOC_013551 |
| TCONS_00027381 | lncRNA | downstream | 707480 | 37541715 ~ 37548709 (-) | False | XLOC_013551 |
| TCONS_00027380 | lncRNA | downstream | 840744 | 37410717 ~ 37415445 (-) | True | XLOC_013550 |
| TCONS_00027379 | lncRNA | downstream | 1337202 | 36902021 ~ 36918987 (-) | False | XLOC_013544 |
| TCONS_00027383 | lncRNA | upstream | 31412 | 38290081 ~ 38297955 (-) | True | XLOC_013555 |
| TCONS_00026985 | lncRNA | upstream | 118009 | 38376678 ~ 38378205 (-) | True | XLOC_013556 |
| TCONS_00027384 | lncRNA | upstream | 500665 | 38759334 ~ 38765900 (-) | False | XLOC_013557 |
| TCONS_00027385 | lncRNA | upstream | 500665 | 38759334 ~ 38768491 (-) | False | XLOC_013557 |
| TCONS_00027386 | lncRNA | upstream | 500665 | 38759334 ~ 38768498 (-) | True | XLOC_013557 |
| TCONS_00026677 | mRNA | downstream | 11127 | 38213778 ~ 38245062 (-) | False | XLOC_013553 |
| TCONS_00026678 | mRNA | downstream | 11318 | 38216810 ~ 38244871 (-) | False | XLOC_013553 |
| TCONS_00026676 | mRNA | downstream | 39605 | 38209055 ~ 38216584 (-) | False | XLOC_013553 |
| TCONS_00026675 | mRNA | downstream | 168090 | 37838402 ~ 38088099 (-) | True | XLOC_013552 |
| TCONS_00026674 | mRNA | downstream | 168314 | 37836960 ~ 38087875 (-) | False | XLOC_013552 |
| TCONS_00026683 | mRNA | upstream | 8334 | 38267003 ~ 38271298 (-) | False | XLOC_013554 |
| TCONS_00026684 | mRNA | upstream | 8582 | 38267251 ~ 38270430 (-) | True | XLOC_013554 |
| TCONS_00026686 | mRNA | upstream | 911458 | 39170127 ~ 39188664 (-) | False | XLOC_013560 |
| TCONS_00026687 | mRNA | upstream | 911458 | 39170127 ~ 39200617 (-) | False | XLOC_013560 |
| TCONS_00026688 | mRNA | upstream | 911458 | 39170127 ~ 39288894 (-) | False | XLOC_013560 |
| TCONS_00026673 | other | downstream | 840836 | 37409823 ~ 37415353 (-) | False | XLOC_013550 |
| TCONS_00026662 | other | downstream | 1790723 | 36455307 ~ 36465466 (-) | True | XLOC_013541 |
| TCONS_00026656 | other | downstream | 2682894 | 35573181 ~ 35573295 (-) | True | XLOC_013536 |
| TCONS_00026632 | other | downstream | 5162448 | 33090443 ~ 33093741 (-) | False | XLOC_013517 |
| TCONS_00026625 | other | downstream | 5729085 | 32525411 ~ 32527104 (-) | True | XLOC_013509 |
| TCONS_00026691 | other | upstream | 927505 | 39186174 ~ 39188401 (-) | True | XLOC_013560 |
| TCONS_00026695 | other | upstream | 1327877 | 39586546 ~ 39586665 (-) | True | XLOC_013565 |
| TCONS_00026696 | other | upstream | 1357106 | 39615775 ~ 39615905 (-) | True | XLOC_013566 |
| TCONS_00026709 | other | upstream | 2444119 | 40702788 ~ 40708524 (-) | True | XLOC_013577 |
| TCONS_00026751 | other | upstream | 5806364 | 44065033 ~ 44073428 (-) | True | XLOC_013607 |
