RNA id: TU86595


Basic Information

Item Value
RNA id TU86595
length 264
lncRNA type intronic
GC content 0.49
exon number 1
gene id G78322
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70240899 ~ 70241162 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcatgcgtcttggcatgctctccagTCTTTGacattgatgttgggtgactGTATGCCACTCCTGGTGCAAAATTTCAGGCAGCTCTGTTTTTTTTGGAGGACTTGTGACCATCTTCCCCTTGATCACATTCCAgcggttttcaatggggttcaggtctggagattgggctggccatgacagggtcttgatctggtggtcctccatccacaccttgattgacctggctgtATGCAATGcagcattgtcctgctggaaaaaccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86594 lncRNA downstream 2227 70238345 ~ 70238672 (-) True G78321
TU86591 lncRNA downstream 7137 70233546 ~ 70233762 (-) True G78318
TU86586 lncRNA downstream 31097 70207568 ~ 70209802 (-) True G78313
TU86574 lncRNA downstream 52084 70186681 ~ 70188815 (-) True G78301
TU86505 lncRNA downstream 160443 70080058 ~ 70080456 (-) True G78237
TU86596 lncRNA upstream 434 70241596 ~ 70241815 (-) True G78323
TU86598 lncRNA upstream 1690 70242852 ~ 70243137 (-) True G78325
TU86602 lncRNA upstream 5169 70246331 ~ 70246530 (-) True G78329
TU86609 lncRNA upstream 15149 70256311 ~ 70256644 (-) True G78336
TU86610 lncRNA upstream 15702 70256864 ~ 70257105 (-) True G78337
XM_036984207.1 mRNA downstream 129482 70095689 ~ 70111417 (-) True LOC110528401
XM_036984204.1 mRNA downstream 129483 70095689 ~ 70111416 (-) False LOC110528401
XM_036984194.1 mRNA downstream 152184 70082835 ~ 70088715 (-) False LOC118965321
XM_036984177.1 mRNA downstream 165001 70056552 ~ 70075898 (-) True LOC118965320
XM_036984184.1 mRNA downstream 174458 70056552 ~ 70066441 (-) False LOC118965320
XM_036984455.1 mRNA upstream 164178 70405340 ~ 70512265 (-) False camk2g2
XM_036984466.1 mRNA upstream 164178 70405340 ~ 70512265 (-) False camk2g2
XM_036984432.1 mRNA upstream 164178 70405340 ~ 70512266 (-) False camk2g2
XM_036984469.1 mRNA upstream 164178 70405340 ~ 70512266 (-) False camk2g2
XM_036984384.1 mRNA upstream 164178 70405340 ~ 70512267 (-) False camk2g2
TU86511 other downstream 152185 70085938 ~ 70088714 (-) True LOC118965321
TU86510 other downstream 153242 70085938 ~ 70087657 (-) False LOC118965321
TU86507 other downstream 155514 70082840 ~ 70085385 (-) False LOC118965321
TU86690 other upstream 113754 70354916 ~ 70355591 (-) True G78414
TU88004 other upstream 1080788 71321950 ~ 71386523 (-) False G79616
TU88006 other upstream 1087862 71329024 ~ 71386523 (-) False G79616
TU87998 other upstream 1135123 71376285 ~ 71386523 (-) False G79616
TU88001 other upstream 1135123 71376285 ~ 71386523 (-) False G79616

Expression Profile